PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8819s0187.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 335aa    MW: 37867.9 Da    PI: 4.9484
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8819s0187.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.56.6e-20468263
                  NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63
                         p+GfrF+Ptdee+v+ yL++k  +++  +++evi++vdi++++PwdLp + ++k++++ wyfF +
  Bostr.8819s0187.1.p  4 PVGFRFRPTDEEIVDIYLRPKNLQSNtSHVDEVINTVDICSFDPWDLPsQsRMKTKDRVWYFFDR 68
                         89*****************99665553788889**************96358899999*****76 PP
2NAM22.72.8e-07689697128
                  NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                          +e++g kk+Lvf    ++ g+k+dWvmhey++
  Bostr.8819s0187.1.p  68 REKIGEKKVLVFK---NRGGSKSDWVMHEYHA 96 
                          5789********7...77889*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.0743172IPR003441NAC domain
SuperFamilySSF1019411.09E-303116IPR003441NAC domain
PfamPF023651.1E-14495IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MANPVGFRFR PTDEEIVDIY LRPKNLQSNT SHVDEVINTV DICSFDPWDL PSQSRMKTKD  60
RVWYFFDREK IGEKKVLVFK NRGGSKSDWV MHEYHATFLS TNQMMMTYTL CKVKFKGEMR  120
EFSSSGIEHT NNSGGLSVET EGSSFHSQES QNPCGFLDVD ALDKAFCNIL SDDFKGFFDD  180
DDDDDEQSKI VSMQDDRNNH RPQKPLTGVF IDHSSDDSDS DPISATTISI QTSSTCDSFG  240
SSNHRIDQIK TQQSPDSTTQ LVSLTQEVSK SLGTSIDTPE TKKNPYDDAQ GTEIGEHKLG  300
QEAIKNKRSG FFYRVIQKFV KKIPLCSQEH DVNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8819s0187.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934231e-100AB493423.1 Arabidopsis thaliana At1g02220 mRNA for hypothetical protein, partial cds, clone: RAAt1g02220.
GenBankBT0202691e-100BT020269.1 Arabidopsis thaliana At1g02220 mRNA, complete cds.
GenBankBT0220631e-100BT022063.1 Arabidopsis thaliana At1g02220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171727.21e-170NAC domain containing protein 5
SwissprotO819141e-171NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A178W5081e-168A0A178W508_ARATH; NAC005
STRINGBostr.8819s0187.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-144NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]