PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.8705s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23871.7 Da PI: 9.8507 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.7 | 1.3e-22 | 19 | 61 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+a+i+fs+ k Bostr.8705s0016.1.p 19 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIAIIVFSPAKK 61 8999***********************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-31 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.927 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.28E-35 | 10 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-28 | 10 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MMSKKKESIG RQKIPMVKIK KESHRQVTFS KRRAGLFKKA SELCTLCGAE IAIIVFSPAK 60 KPFSFGHPSV ESVLDRYLSR NSMSLAQTQQ PQGNPAAGCE LNMQLTQVLS EVEDEKKKGQ 120 AMEEIRKASV RRSMINWWEK PVEEMNMFQL QEMKHALEEL RKTVVTNMAP LSEVKDDVFG 180 FLDNKVTAPS YMNMSSGLPS FYNLPNGNGC F* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 6e-16 | 10 | 81 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 5e-16 | 9 | 81 | 1 | 73 | MEF2C |
5f28_B | 5e-16 | 9 | 81 | 1 | 73 | MEF2C |
5f28_C | 5e-16 | 9 | 81 | 1 | 73 | MEF2C |
5f28_D | 5e-16 | 9 | 81 | 1 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.8705s0016.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC006585 | 0.0 | AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ056542 | 0.0 | DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds. | |||
GenBank | EU836691 | 0.0 | EU836691.1 Arabidopsis thaliana MADS box protein AGL61 (AGL61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429480.1 | 1e-146 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-131 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7LJG1 | 1e-136 | D7LJG1_ARALL; Predicted protein | ||||
STRING | Bostr.8705s0016.1.p | 1e-157 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-134 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.8705s0016.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|