PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8705s0015.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 501aa    MW: 56284.9 Da    PI: 5.0043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8705s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.9e-07144165527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           C+ff++   C++G++C+ +Hg+
  Bostr.8705s0015.1.p 144 MCKFFMQ-QRCRFGSSCRSSHGQ 165
                          6******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.558139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016139165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4143166IPR000571Zinc finger, CCCH-type
SMARTSM004439.3E-14300346IPR000467G-patch domain
PROSITE profilePS5017413.143302348IPR000467G-patch domain
PfamPF015851.1E-13302345IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MASEEDKALE NLLDNQLKEQ KESLSAIDEA LASDPSNPEL LSVHEELVYA IKEAEEGLFH  60
LKRARLLQEA DIVLNGLSHD AGVEAEHLNE LEPDKIEEKK ELDGSKCRFR HTDGRWYNGR  120
IIGFEGSDTA KISFLSPTSE SMTMCKFFMQ QRCRFGSSCR SSHGQDVPLS SLKNYEQTEW  180
KESMVGSKIW AVSGSKYDIW RKAELESWDD ELQIGGVVFR DNGSCAKLGS DCMALSEYAQ  240
MTDDDREEEE EDEEGSASDS EESVSSEYDE ESPQGIGFLE SINQSRGVQT DTALFAKWEN  300
HTRGIASKMM ANMGYREGMG LGASGQGRLN PVLAKVLPAK RSLDYALEHI KDGEGKSEKQ  360
KKKRSRGGKR KREKKFAEAA RAAKQEEESK PDLFSLINEQ IFPTRHEKVN GIEYVKKWQN  420
KGPVDRKALV AYEDEVKDLK LEAMKLEQMV NRNKNDQVVS DAATRRLNEV RKALASTLAA  480
QAAASNAVES KEKEKKWLKF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359374QKKKRSRGGKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8705s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291890.0AK229189.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-48-E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472500.10.0PREDICTED: zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A087GRV50.0A0A087GRV5_ARAAL; Uncharacterized protein
STRINGBostr.8705s0015.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein