PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1489.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 233aa    MW: 26028.2 Da    PI: 7.2778
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1489.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17160194135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg++kT +WR gp g ktLCnaCG+++++ +l
  Bostr.7867s1489.2.p 160 CSHCGVKKTLQWRMGPLGAKTLCNACGVRFKSGRL 194
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.5E-821230IPR016679Transcription factor, GATA, plant
SMARTSM004011.1E-12154208IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.435154190IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-12156217No hitNo description
Gene3DG3DSA:3.30.50.106.2E-12158192IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15160194IPR000679Zinc finger, GATA-type
CDDcd002021.49E-13160216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MECVEAFLGD FSVDDLLDLS NADTAFIGEE SSSSQREEED EQERDKAKRS SDQSTRLSPL  60
EDLLSFPRDV PDLEWLSNFV EDSFSESYPS GDFPVSVEVQ RQSVPVKPRS KRRRINGRIW  120
SLESSSPLLS TAVSEKKKRG RQTAEVSSGD GVQQQPRRCC SHCGVKKTLQ WRMGPLGAKT  180
LCNACGVRFK SGRLLPEYRP ACSPTFSTEI HSNSHRKVLE LRLMKTADPG RV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1489.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221411e-128AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project).
GenBankAL1615891e-128AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankAY0724341e-128AY072434.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.
GenBankAY1147201e-128AY114720.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.
GenBankCP0026871e-128CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432188.11e-129PREDICTED: GATA transcription factor 7-like
SwissprotO655151e-129GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A178UWZ01e-127A0A178UWZ0_ARATH; GATA transcription factor
STRINGBostr.7867s1489.1.p1e-144(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-122GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]