PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1389.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 286aa    MW: 31547.4 Da    PI: 9.0512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1389.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017163185123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+F ++  L  H  +H
  Bostr.7867s1389.1.p 163 FECGGCKKVFGSHQALGGHRASH 185
                          89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0377799IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.41177104IPR007087Zinc finger, C2H2
PfamPF139122.0E-777101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-77899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-7158185No hitNo description
PfamPF139121.1E-7162186IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66163190IPR007087Zinc finger, C2H2
SMARTSM003553163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-5222248No hitNo description
PfamPF139125.4E-11222247IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494223250IPR007087Zinc finger, C2H2
SMARTSM003550.11223245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTNNNSYYDP NFHIPLHPSN ARNPNPNLQF ALSPSYDHSP KKKRTKTVAS SSSSSPKSAS  60
KPRYTKKPDP NAPKITRPCT ECGRQFWSWK ALFGHMRCHP ERQWRGINPP PNYRGPTTAA  120
SSKQLIQRSP NWVSFMSEED HEVASCLLML SNGTPSSSSS ERFECGGCKK VFGSHQALGG  180
HRASHKNVKG CFAITNITDD PMTVTTSSDQ DHQGKIFTFS GHHKCNICFR VFSSGQALGG  240
HMRCHWEREE EPMIGGALDL NVPGTIQDLS TSDTLGCSLD LRLGL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1389.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937190.0AB493719.1 Arabidopsis thaliana At4g35280 mRNA for hypothetical protein, partial cds, clone: RAAt4g35280.
GenBankAL0226040.0AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBankAL1615870.0AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ4468960.0DQ446896.1 Arabidopsis thaliana clone pENTR221-At4g35280 zinc finger family protein (At4g35280) mRNA, complete cds.
GenBankDQ6532460.0DQ653246.1 Arabidopsis thaliana clone 0000012370_0000008938 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444960.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654990.0ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A178UTT41e-180A0A178UTT4_ARATH; DAZ2
STRINGBostr.7867s1389.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-176C2H2-like zinc finger protein