PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1292.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 382aa    MW: 43879.2 Da    PI: 6.0951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59e-1712101198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ff+v+   ++++s+ +v+p ++ ++   +   +k+++l+ + g sW+v    + ++ ++ +++GW +Fv++n L +gDf++F ++g++ f
  Bostr.7867s1292.1.p  12 FFQVF--VSHFNSDSMVIPISYYDHL--PRLFPKKVILQGPGGCSWNVAT--KIRGAEVHFAQGWAKFVEDNTLSDGDFLTFVYNGDHIF 95 
                          66666..78899999********544..4457889***************..8888889999**********************999988 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v+++r
  Bostr.7867s1292.1.p  96 --EVSIYR 101
                          ..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-2210105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-1510101No hitNo description
Gene3DG3DSA:2.40.330.109.5E-2010105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.1710103IPR003340B3 DNA binding domain
SMARTSM010192.4E-1612103IPR003340B3 DNA binding domain
PfamPF023621.9E-1412101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAATDFQFPP RFFQVFVSHF NSDSMVIPIS YYDHLPRLFP KKVILQGPGG CSWNVATKIR  60
GAEVHFAQGW AKFVEDNTLS DGDFLTFVYN GDHIFEVSIY RSDECKETSE VIEVEEDEEN  120
SVCSLSSDDT DTCSKSEMKI TIPKGRDKGK SKVEVVEDSD ENEDSVYSES SKETETDTDT  180
NSELKIAKTI PKRVNKGKKK EEAVEESSDE DGDSDSDYNE AFGQLDFEEK SNSEDSSYAP  240
HNEDTATCVK PKVPNLKKKE AAKKRKKVEP KIKNPETYLD NPKNVHFETN VKNRLYELLV  300
HAQLVKDYCL RFGDHVDYID RFGKLRAKTA KWKDQRVCIK RWMRICTRNG LKKEDRILCE  360
LLRRGSYVYA IKLHVIRRRN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A8e-161110510104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1292.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635063.10.0B3 domain-containing protein At4g34400 isoform X1
SwissprotQ9SZ051e-170Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLR0F8940.0R0F894_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.7867s1292.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-125B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]