PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s1149.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | TALE | ||||||||
Protein Properties | Length: 471aa MW: 53544.2 Da PI: 6.2371 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 4e-08 | 388 | 426 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA + gLt +qV++WF N R + Bostr.7867s1149.1.p 388 MFQNflHPYPKDSEKYLLAIRSGLTRSQVSNWFINARVR 426 5887779******************************88 PP | |||||||
2 | BELL | 90.8 | 1.4e-29 | 263 | 333 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r++l+++k++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i Bostr.7867s1149.1.p 263 QRRALEAQKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 333 6899*****************************************.************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.1E-60 | 193 | 331 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-27 | 199 | 329 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 10.932 | 367 | 430 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-5 | 370 | 434 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.12E-10 | 370 | 431 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-15 | 371 | 439 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-25 | 373 | 436 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.6E-14 | 387 | 426 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MDNDNTFSSL DNVMADQNPL LMDFIPSRED STSFSTMLPW NSIRSDPLQM GGFDIFNSML 60 TNKYLSSTSR SFDVQENRNV ESFEVMAPPP PLHPLDHLRA YDDSSNNMWG FEANSEFQTY 120 SGVVGPSEPM LSTFGEEDFP FLISNKRNNE LSLSLATDVS DECSEISLCA ATRLASEQAS 180 CSSKDISNNV VTQGFSQLIF GSKYLHSVQE ILSHFATYSL DYSSRGTESG AANSAFTSRF 240 ENLTEFLDDD SNNSEAGLGS TLQRRALEAQ KTHLLDLLQM VDDRYSHCVD EIHTVVSAFH 300 AATELDPQLH TRFALQTISF LYKNLRERIC KKILAMGSVL ERGKDKSQEN SMFHQHCLLQ 360 QLKRKNHQIW RPQRGLPEKS VSVLRTWMFQ NFLHPYPKDS EKYLLAIRSG LTRSQVSNWF 420 INARVRLWKP MIEEMYAEMN KRKLNNSHLQ PNGATLRMPK SVMMSQAMHK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-13 | 376 | 434 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-13 | 376 | 434 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 1e-13 | 376 | 434 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-13 | 376 | 434 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s1149.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072174 | 0.0 | AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds. | |||
GenBank | AY096513 | 0.0 | AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds. | |||
GenBank | X80126 | 0.0 | X80126.1 A.thaliana AtH1 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447305.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_010447306.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Swissprot | P48731 | 0.0 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | D7M9B9 | 0.0 | D7M9B9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.7867s1149.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8228 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 0.0 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s1149.1.p |
Publications ? help Back to Top | |||
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