PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1015.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 525aa    MW: 59050.3 Da    PI: 7.9928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.6e-1224911899
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         l  +f+ +h +       l + d s r+W+vkl  ++++    l++GW+eF+ +++ +++D++vFk++g++ f  +v+v ++
  Bostr.7867s1015.1.p 24 LDAEFLMNHTK------VLLISDASDRVWNVKL--DGGR----LADGWEEFAGEHKFRDRDVLVFKHHGDEVF--HVSVASR 91
                         55556544443......478889**********..9998....***********************9999999..8887665 PP
2B368.87.4e-22161256198
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+++ ++ ++lk++rl lp++f+  + +++k    ++ +++e+gr+W++k+  + +sg +++++GWk+F++ n+L +gD + Fkl++ ++
  Bostr.7867s1015.1.p 161 FITACVSRYSLKKDRLDLPRNFTVLFgEHQK--ACEIDVMNEQGRRWTMKFAKNISSGVFYIRTGWKHFCSTNELSQGDLCKFKLVQ-NG 247
                          67778899**************977755554..458***************99999999**************************99.55 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          +++v+ ++ 
  Bostr.7867s1015.1.p 248 ERPVLWLCP 256
                          557877775 PP
3B369.64.2e-22289383699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           +++  ++g+l+lp +f++e+++kk++   ++l +++gr+W+ +l++    r++s++++l+kGW+e+++ang+k++D++ ++l++ ++++
  Bostr.7867s1015.1.p 289 YTPSRDSTGQLSLPVSFTRENDIKKAG--NVILLNQDGRKWSSYLQItglgRGGSEWFYLRKGWREMCEANGVKVNDSFKLELMW-KGAN 375
                          5678888999************99888..5***************999999999*******************************.9999 PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                          +++k+++k
  Bostr.7867s1015.1.p 376 PMFKFCSK 383
                          ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.898792IPR003340B3 DNA binding domain
SMARTSM010195.2E-121092IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-112790IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-72888No hitNo description
Gene3DG3DSA:2.40.330.106.5E-113390IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-18154257IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-18160256No hitNo description
SuperFamilySSF1019367.85E-19161258IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-20161256IPR003340B3 DNA binding domain
SMARTSM010192.8E-25161258IPR003340B3 DNA binding domain
PROSITE profilePS5086315.072161257IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-18279383IPR015300DNA-binding pseudobarrel domain
CDDcd100174.32E-16283382No hitNo description
SMARTSM010198.8E-23284384IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393284383IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-18286385IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-22287383IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MVDPPHFSLF QQKFLTGDKP LLTLDAEFLM NHTKVLLISD ASDRVWNVKL DGGRLADGWE  60
EFAGEHKFRD RDVLVFKHHG DEVFHVSVAS RSVSGDMQHA SSSYVDTEDA YLDDDYVDAD  120
DNDDGEDEDD DDDDGAGDKA NCCDSGNKKP EADSSSGHSC FITACVSRYS LKKDRLDLPR  180
NFTVLFGEHQ KACEIDVMNE QGRRWTMKFA KNISSGVFYI RTGWKHFCST NELSQGDLCK  240
FKLVQNGERP VLWLCPQESG NGHKEKRTLD EVSKGKEKKA PSPTVIIKYT PSRDSTGQLS  300
LPVSFTREND IKKAGNVILL NQDGRKWSSY LQITGLGRGG SEWFYLRKGW REMCEANGVK  360
VNDSFKLELM WKGANPMFKF CSKIENHENK GKGNQRTCKK RACVTAPQPR NVKKTPRVGV  420
EGRVNKRISR GPEHQVDEER GRTQVSNRTN TISRKFLRLQ PRSRSVSDQV ASVKQGIIDT  480
LNTVRQCRTE LETSEQNLQA SLLAINALGE RISGISKILS NNLV*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038910.0BT003891.1 Arabidopsis thaliana clone RAFL15-10-H22 (R20619) unknown protein (At4g31610) mRNA, complete cds.
GenBankBT0050020.0BT005002.1 Arabidopsis thaliana clone U20619 unknown protein (At4g31610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438016.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotQ84J390.0REM1_ARATH; B3 domain-containing protein REM1
TrEMBLD7MB480.0D7MB48_ARALL; Uncharacterized protein
STRINGBostr.7867s1015.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]