PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0357.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 431aa    MW: 46742.9 Da    PI: 7.3594
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0357.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-07105127326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++lC+f+   G C+y d+C++ H+
  Bostr.7867s0357.1.p 105 EKLCKFWVD-GNCPYSDKCRYLHC 127
                          579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.852652IPR000571Zinc finger, CCCH-type
SMARTSM003560.0852851IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.0E-5102126IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4104128IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-5105127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6106125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.6E-17126239IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.9E-6133172IPR001680WD40 repeat
SuperFamilySSF509785.31E-46134424IPR017986WD40-repeat-containing domain
PfamPF004001.9E-4136172IPR001680WD40 repeat
PROSITE profilePS5008213.55140181IPR001680WD40 repeat
PROSITE profilePS5029421.621140342IPR017986WD40-repeat-containing domain
PRINTSPR003204.7E-6159173IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM003201.7212249IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.2E-31240423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.1256293IPR001680WD40 repeat
PROSITE profilePS5008211.578263302IPR001680WD40 repeat
PRINTSPR003204.7E-6280294IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4296333IPR001680WD40 repeat
PfamPF004000.0028298332IPR001680WD40 repeat
PRINTSPR003204.7E-6320334IPR020472G-protein beta WD-40 repeat
SMARTSM0032014337380IPR001680WD40 repeat
SMARTSM003202.8383420IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDLDMNGGNK RVFQRLGGGS NRPTTDSNQK VCFHWRAGRC NRYPCPYLHR ELPGPGPVAA  60
SSSTNKRVAD ESGFAGPSHR RGPGFSGSAN SWGRFGGNRT VTKTEKLCKF WVDGNCPYSD  120
KCRYLHCWSK GDSFSLLTQL DGHQKVVTGI ALPSGSDKLY TASKDETVRI WDCDSGQCTG  180
VLNLGGEVGC MISEGPWLLV GMPNLVKAWN IQNNADLSLT GPVGQVYSLV VGTDLLFAGT  240
QDGSILVWKY NSTTSCFDPA ASLKGHTLAV VSLYVGANRL YSGAMDNSIK VWSLDNLQCI  300
QTLTEHTSVV MSLICWDQFL LSCSLDNTVK IWAATEGGNL EVTYTHKEEY GVLALCGVHD  360
AEAKPVLLCS CNDNSLHLYD LPSFTERGKI LAKQEIRSIQ IGPGGIFFTG DGSGQVKVWK  420
WSTEPTVILS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-211374238323Tako8
6g6n_A5e-211374238323Tako8
6g6n_B5e-211374238323Tako8
6g6n_C5e-211374238323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0357.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283770.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_023635451.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGBostr.7867s0357.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1