PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s0055.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19231.7 Da PI: 6.4995 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.2 | 6e-29 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +Ca+Ck+l+++Ca++C ap+fp+++ +f+ vh++FGa+nv ++l++l + e+re+a++sl+y Aear rd ++G++g+il++++ l++ Bostr.7867s0055.1.p 5 RCAVCKILKETCAPGCKTAPHFPSHD-TRFEDVHQIFGAANVREILNNLgSVEQREIAAKSLCYAAEARRRDSISGCHGMILHYESILNN 93 6**********************998.89********************78889************************************ PP DUF260 90 lkaelallkee 100 ++++++++ +e Bostr.7867s0055.1.p 94 VEQDIKSAVNE 104 ***99987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.544 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-28 | 5 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MASNRCAVCK ILKETCAPGC KTAPHFPSHD TRFEDVHQIF GAANVREILN NLGSVEQREI 60 AAKSLCYAAE ARRRDSISGC HGMILHYESI LNNVEQDIKS AVNELETHVG PDQVPNLFDL 120 PIPDDFLTTK ASLDNYIEKI KSLNTVEKNQ KMGDCHGADG ASTSAGPSTA LARKHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-21 | 2 | 105 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-21 | 2 | 105 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s0055.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282797.1 | 3e-91 | LOB domain-containing protein 32 | ||||
Swissprot | O49651 | 1e-73 | LBD32_ARATH; LOB domain-containing protein 32 | ||||
TrEMBL | R0GTP6 | 7e-90 | R0GTP6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7867s0055.1.p | 1e-130 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22700.1 | 5e-76 | LOB domain-containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s0055.1.p |