PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7305s0070.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 356aa    MW: 39171 Da    PI: 4.6727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7305s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31169227259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  Bostr.7305s0070.1.p 169 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 227
                          79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31155229IPR003657WRKY domain
SuperFamilySSF1182904.45E-27161229IPR003657WRKY domain
PROSITE profilePS5081133.281163229IPR003657WRKY domain
SMARTSM007746.1E-39168228IPR003657WRKY domain
PfamPF031063.1E-26170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSSEDWDLFA VVRSCSSSVS TTNSCAGHED DGGNCKQQQD PPPPLFTHIH GDKESSSSCN  60
ELQDSCKPFL PVTTTTWSPP PLLPTPIVSS SAAPNVLMKQ EQGLLESQDQ KPPLGVRVFP  120
PSTSSSVFVF RGQRDQLLQQ QSQPPLRSRK RKNQQKRTIC HVTQENLSSD MWAWRKYGQK  180
PIKGSPYPRN YYRCSSSKGC LARKQVERSN LDPNIFIVTY TGEHTHPRPT HRNSLAGSTR  240
NKSQPVNPIP KPDSSGQTVI GSNTVKEEIH LSPTTPLKGN DDVQGTNGDE DMISQEVNME  300
DEEEEEEEDD VEDVGEDDDV DDLLIPNLAV RDRDDLFFAG NFSSWSAGSA GDGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-201702301880Disease resistance protein RRS1
5w3x_D8e-201702301880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7305s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183100.0AF418310.1 Arabidopsis thaliana WRKY transcription factor 27 (WRKY27) mRNA, complete cds.
GenBankAK2304360.0AK230436.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-40-N05.
GenBankBT0264510.0BT026451.1 Arabidopsis thaliana At5g52830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445280.10.0PREDICTED: probable WRKY transcription factor 27
SwissprotQ9FLX81e-160WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A1J3E2740.0A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRINGBostr.7305s0070.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-136WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]