PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7200s0089.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 413aa MW: 45479.6 Da PI: 8.9701 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.6e-20 | 275 | 324 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grW+AeIrd + + +r++lg+f+ ae Aa+a+++a+++++g Bostr.7200s0089.1.p 275 RYRGVRQRP-WGRWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 324 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.159 | 275 | 332 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 275 | 324 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 275 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-35 | 275 | 338 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 275 | 333 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-10 | 276 | 287 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.81E-27 | 283 | 334 | No hit | No description |
PRINTS | PR00367 | 1.1E-10 | 298 | 314 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MGFRAELNTK EFQAFCITLA NEIDAAIGKN EVPGNVQELA LVLNDVCQRI CDDYQTTAVV 60 MALMISAKSA CQIGWFPQRE SQELLAIIDL MWNGFNSPES VTPSVNSPVS LISQVIERFY 120 PCVKLGHIIV SFGAKPDSKI LVKDFHISKM MPHSRKQRVG LFVVRTDDIS KSSCIVHPQE 180 VRTSDLMERW NHIHGRGINQ TQLPPMPLSQ LHYAMQNQSH NTLTVDQYFS GGTSTPKVRE 240 ASSNMSGPGP IYEYTTTTTA NSAASSFSGD QPRRRYRGVR QRPWGRWAAE IRDPFKAARV 300 WLGTFDNAES AARAYDEAAL RFRGNKAKLN FPENVKLVSP ASTAAAAAQP QTAVQRPTQL 360 RNSGSTTTLL PIRPASDQTV HNSAIDAIVQ LELLRDGSST TSVSAATFYG FI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 274 | 335 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-22 | 274 | 335 | 4 | 66 | ATERF1 |
3gcc_A | 1e-22 | 274 | 335 | 4 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7200s0089.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY140092 | 0.0 | AY140092.1 Arabidopsis thaliana putative protein (At5g64750) mRNA, complete cds. | |||
GenBank | BT008480 | 0.0 | BT008480.1 Arabidopsis thaliana At5g64750 gene, complete cds. | |||
GenBank | KP067953 | 0.0 | KP067953.1 Arabidopsis thaliana protein inhibitor of activated STAT-like 1 (PIAL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867647.1 | 1e-101 | E4 SUMO-protein ligase PIAL1 isoform X1 | ||||
STRING | Bostr.7200s0089.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 6e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7200s0089.1.p |