PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7128s0585.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ARF | ||||||||
Protein Properties | Length: 902aa MW: 99649.4 Da PI: 5.8119 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 158 | 259 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F Bostr.7128s0585.1.p 158 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI 245 99*********************999****996444444..8************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+v+v+r+ Bostr.7128s0585.1.p 246 --RDEKSQLMVGVRRA 259 ..4577778*****97 PP | |||||||
2 | Auxin_resp | 111.6 | 7.9e-37 | 284 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F ++YnPra+++eFv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+ Bostr.7128s0585.1.p 284 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 367 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-45 | 148 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-41 | 151 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.74E-23 | 157 | 258 | No hit | No description |
SMART | SM01019 | 1.1E-25 | 158 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 158 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-22 | 158 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.8E-32 | 284 | 367 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.8E-9 | 787 | 878 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.746 | 792 | 876 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.86E-7 | 806 | 871 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 902 aa Download sequence Send to blast |
MMASLACVED KMKTSGLVNG GTTTTTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA 60 GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP NLPSQLMCQV HNVTLHADKD 120 SDEIYAQMSL QPVHSERDVF PVPDFGLLSR SKHPAEFFCK TLTASDTSTH GGFSVPRRAA 180 EKLFPPLDYT AQPPTQELVV RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD 240 SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP 300 RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG 360 SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT SGLKRQLHPS YFAGETEWGS 420 LIKRPLIRVP DSTNGIMPYA SFPNMASEQL MKMMMRPHNN QNVPSFMSEM QQNVVMGNGG 480 LLGDMKMQQP MMMNQKSEMM QPESKLTVNP SACNTSGQEQ NLSQSMSAPA KHENSTLSGC 540 SSGRVQHGLE QSIEQVSQVT TATVCNEEKV NQLIQKPGAL SPVQADPCLD ISQQIYPAQS 600 DTINGFSFLE TDELTSQVSS FQSLAGSYKQ PFMLSSQDSS AVVLPDSTNS PLFHDVWENQ 660 LNGLKFDQFS PLMQQDLYAS QNMCMSNSTN SNILDPPLSN TVLDDFCAIK ETDFQNHPSS 720 CLVGNNTSFA QDVQSQITSA SFADSQAFSR QDFPDNSGGT GTSSSNVDFD DSSLLQHSKG 780 SSWQKIATPR VRTYTKVQKT GSVGRSIDVT SFKDYEELKS AIECMFGLEG LLTHPQSSGW 840 KLVYVDYEND VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGINDLKTSV 900 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 392 | 1 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7128s0585.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334716 | 0.0 | AF334716.1 Arabidopsis thaliana clone C00027 (h) auxin response factor 5 (At1g19850) mRNA, complete cds. | |||
GenBank | BT002050 | 0.0 | BT002050.1 Arabidopsis thaliana transcription factor (At1g19850) mRNA, complete cds. | |||
GenBank | BT008805 | 0.0 | BT008805.1 Arabidopsis thaliana At1g19850 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306729.1 | 0.0 | auxin response factor 5 | ||||
Refseq | XP_023644672.1 | 0.0 | auxin response factor 5 | ||||
Refseq | XP_023644673.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | R0GUJ7 | 0.0 | R0GUJ7_9BRAS; Auxin response factor | ||||
STRING | Bostr.7128s0585.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7128s0585.1.p |