PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7128s0493.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

WRKY

Protein Properties

Length: 535aa MW: 59033 Da PI: 6.713

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7128s0493.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	233	292	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Bostr.7128s0493.1.p 233 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRCSEDMSILISTYEGTHNHP 292 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-31	218	294	IPR003657	WRKY domain
SuperFamily	SSF118290	1.24E-26	226	294	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	228	294	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	233	293	IPR003657	WRKY domain
Pfam	PF03106	6.3E-26	234	292	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MEKEDFLKSS HGGEESQEEM KKLDSSHDES HQEHDHIIRS KLDSTKVEME EAKEENRRLK 60 SSLSKIRKDF DILQTQYNQL MVQHEEPKKF SSKGHHQDKD EVSEREELVS LSLGRRLKSP 120 VPSGSMMNKE EKNKDFMEEA GEDKKLDEKG SDQGLSMAFE YKGLSNPNEK FEIDHTKETM 180 SLEIGNNNKS PSENSFGFKN DEDDHEDQEE LLPQNLVKKT RVSVRSRCET PTMNDGCQWR 240 KYGQKIAKGN PCPRAYYRCT IAASCPVRKQ VQRCSEDMSI LISTYEGTHN HPLPMSATAM 300 ASATSAAASM LLSGASSSSS VAAADLHGLN FSLSGNNITP KSKSPFLQTS SAPSSSGHPT 360 ITLDLTTSSS SQQPFLSMLN RFNSPPSNVS RSRSYPSTNL NFSNNTNTLQ NWSGGGGNHS 420 NQYRAPYGNI STHQQLPYQS IIQTRTTGSS FDPFGRSSSS SSSSSSHPTQ TNHDHIGIKN 480 IITHQVPSFP AETIKAITTD PSFQSALATA LSSIIGGDLK IDHNVTRNDA EKSP*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MEKEDFLKSS HGGEESQEEM KKLDSSHDES HQEHDHIIRS KLDSTKVEME EAKEENRRLK  60
SSLSKIRKDF DILQTQYNQL MVQHEEPKKF SSKGHHQDKD EVSEREELVS LSLGRRLKSP  120
VPSGSMMNKE EKNKDFMEEA GEDKKLDEKG SDQGLSMAFE YKGLSNPNEK FEIDHTKETM  180
SLEIGNNNKS PSENSFGFKN DEDDHEDQEE LLPQNLVKKT RVSVRSRCET PTMNDGCQWR  240
KYGQKIAKGN PCPRAYYRCT IAASCPVRKQ VQRCSEDMSI LISTYEGTHN HPLPMSATAM  300
ASATSAAASM LLSGASSSSS VAAADLHGLN FSLSGNNITP KSKSPFLQTS SAPSSSGHPT  360
ITLDLTTSSS SQQPFLSMLN RFNSPPSNVS RSRSYPSTNL NFSNNTNTLQ NWSGGGGNHS  420
NQYRAPYGNI STHQQLPYQS IIQTRTTGSS FDPFGRSSSS SSSSSSHPTQ TNHDHIGIKN  480
IITHQVPSFP AETIKAITTD PSFQSALATA LSSIIGGDLK IDHNVTRNDA EKSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-19	220	294	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7128s0493.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006307358.2	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A178WBT0	0.0	A0A178WBT0_ARATH; WRKY61
STRING	Bostr.7128s0493.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Phytozome	Bostr.7128s0493.1.p

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]