PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7128s0342.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24163.7 Da PI: 9.6405 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.7 | 2.3e-21 | 50 | 98 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++s+rqvtfskRr g++KK ELSvL++a++avi fs g++y + Bostr.7128s0342.1.p 50 KEIKEESKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSRCGRIYRF 98 689*******************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-23 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.207 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-22 | 43 | 119 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-21 | 52 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.02E-19 | 56 | 113 | No hit | No description |
PRINTS | PR00404 | 1.4E-18 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEEDRETSSM TCLTPKDQLQ NPNVSVSKPK KETTTQTPKT TRGRQKIEIK EIKEESKRQV 60 TFSKRRRGLF KKSAELSVLT GAKIAVITFS RCGRIYRFGH VDALIDKYLR KSPVKLEAYS 120 GDNVAEEEGR RPWWERPVES VPEEELEDYV AALTVLRENL GKKIIAMSND RTVEIVPAWP 180 INMMGWKQTM DMQSLENLTD GITRCRVGQN G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7128s0342.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493462 | 0.0 | AB493462.1 Arabidopsis thaliana At1g17310 mRNA for hypothetical protein, partial cds, clone: RAAt1g17310. | |||
GenBank | AY141240 | 0.0 | AY141240.1 Arabidopsis thaliana MADS-box protein AGL100 mRNA, complete cds. | |||
GenBank | BT025284 | 0.0 | BT025284.1 Arabidopsis thaliana At1g17310 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446258 | 0.0 | DQ446258.1 Arabidopsis thaliana clone pENTR221-At1g17310 MADS-box protein (At1g17310) mRNA, complete cds. | |||
GenBank | DQ652841 | 0.0 | DQ652841.1 Arabidopsis thaliana clone 0000016569_0000011566 unknown mRNA. | |||
GenBank | T13M22 | 0.0 | AC026479.2 Sequence of BAC T13M22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892945.1 | 1e-122 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7KFE1 | 1e-121 | D7KFE1_ARALL; MADS-box protein | ||||
STRING | Bostr.7128s0342.1.p | 1e-155 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17310.1 | 7e-96 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7128s0342.1.p |