PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7128s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NF-YA | ||||||||
Protein Properties | Length: 299aa MW: 32725.6 Da PI: 10.4886 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.6 | 1.7e-32 | 167 | 223 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF Bostr.7128s0065.1.p 167 NEPIFVNAKQYHAILRRRKHRAKLEAQNKL-IKCRKPYLHESRHLHALKRARGSGGRF 223 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.3E-36 | 165 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.675 | 166 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.9E-27 | 168 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-23 | 169 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 171 | 191 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.6E-23 | 200 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MQVFQRKVSS WGNTMPTNSN IQGSQSFSLT KDMMLSTHSG LQLQDQDSSS TQSTGETGGG 60 EVASFKERNR YGCSIVNTNL LGYIENPGKP IESYTKSTTT SSMVSQDSVF PPPTSGQTPW 120 SLQGAETSHF NGFLAPEYAS TPTVLPHLEM MGLVSSRVPL PHNIQENEPI FVNAKQYHAI 180 LRRRKHRAKL EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ 240 MANGHNFSKS PRSGGSGIGS SSITPSSNSN RINMFQNPQF RFSGYPSTHH VSALMSGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-19 | 168 | 228 | 3 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7128s0065.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF386957 | 0.0 | AF386957.1 Arabidopsis thaliana Unknown protein (F15I1.26) mRNA, complete cds. | |||
GenBank | AY081445 | 0.0 | AY081445.1 Arabidopsis thaliana unknown protein (At1g54160) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010462321.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like | ||||
Refseq | XP_010462322.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like | ||||
Refseq | XP_010462323.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-5-like | ||||
Swissprot | Q9SYH4 | 1e-175 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | D7KLF3 | 1e-178 | D7KLF3_ARALL; Predicted protein | ||||
STRING | Bostr.7128s0065.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11633 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-159 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7128s0065.1.p |