PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0182.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 540aa    MW: 60735.2 Da    PI: 5.1516
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0182.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.12.6e-10219153922374
                 GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeer 111
                          ++L +++e +s+ g+p++R+ +yf+eAL+++  +          + + s+++ ++ + ++k++++++P+ kf+hltaNqaIlea++++e 
  Bostr.6864s0182.1.p 191 ETLIQIRESVSELGNPIERVGFYFAEALSHKERE----------SPALSSSSLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSEN 270
                          6799*************************99777..........2223334589************************************ PP

                 GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                          +Hi+Df+i qG+QW aLlqaLa+R++g+p ++Ri g+ +p+ g     +l +tg+rL++fA+ l+++fefn+ v + ++ l+ +++rv+p
  Bostr.6864s0182.1.p 271 IHIVDFGIFQGIQWSALLQALATRASGKPtRIRISGIPAPSLGdsPGPSLIATGNRLRDFAAILDLNFEFNP-VLTPIQFLNGSSFRVDP 359
                          *************************77776**********99988999************************.799************** PP

                 GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                          +E+l+Vn++l+l++llde++++     + L+l +sl+P++v++ e e+++n+ +F++r+ ++l++ysa+f+sle +l r+s+er  vEr+
  Bostr.6864s0182.1.p 360 DEVLVVNFMLELYKLLDETATSVG---TALRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLERDSKERLRVERV 446
                          ****************99999999...9************************************************************** PP

                 GRAS 289 llgreivnvvacegae.....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvS 371
                          l+gr+i ++v   +++     r+  +e++e+Wr  +e+aGF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ +L++vS
  Bostr.6864s0182.1.p 447 LFGRRILDLVRSDNDNkkpgtRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNNVSLLTVS 536
                          **********9877653333477889************************************9999*****9999999************ PP

                 GRAS 372 aWr 374
                          +Wr
  Bostr.6864s0182.1.p 537 SWR 539
                          **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.358145517IPR005202Transcription factor GRAS
PfamPF035149.0E-100191539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQKQQQEQQ QQHEQQNQSF GYTLPGSGFS DDPFQVTNDR  60
GFHFPHLEQH QNTVTSDGFR FSDGEFDSDE WMESLINGGD SLQTNPDLPI YGHDPFVTFP  120
SRLSVPSLLN RVNKDDDSAS QLTQPSVSTA IWTTSPQHHP PPPSPQPDFD LNQPILKAIH  180
DYARKPVTKP ETLIQIRESV SELGNPIERV GFYFAEALSH KERESPALSS SSLEDFILSY  240
KTLNDACPYS KFAHLTANQA ILEATNQSEN IHIVDFGIFQ GIQWSALLQA LATRASGKPT  300
RIRISGIPAP SLGDSPGPSL IATGNRLRDF AAILDLNFEF NPVLTPIQFL NGSSFRVDPD  360
EVLVVNFMLE LYKLLDETAT SVGTALRLAR SLNPRIVTLG EYEVSLNRVE FANRVKNSLR  420
FYSAVFESLE PNLERDSKER LRVERVLFGR RILDLVRSDN DNKKPGTRFG LMEEKEQWRV  480
LMEKAGFEPV KPSNYAVSQA KLLLWNYNYS TLYSLVESEP GFISLAWNNV SLLTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1291725391375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0182.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292520.0AK229252.1 Arabidopsis thaliana mRNA for scarecrow-like 7, complete cds, clone: RAFL16-53-M18.
GenBankAL1329790.0AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426606.10.0PREDICTED: scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLA0A384KPG40.0A0A384KPG4_ARATH; Uncharacterized protein
TrEMBLC0SVE00.0C0SVE0_ARATH; Uncharacterized protein At3g50650 (Fragment)
STRINGBostr.6864s0182.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]