PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0056.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 269aa    MW: 31263.1 Da    PI: 6.1153
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.3e-34261172102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++e+++d+++++++sw++ g+sfvv+d  +f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F  g++
  Bostr.6864s0056.1.p  26 FLTKTFEMVDDPNTDQIVSWNRGGTSFVVWDLYSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLVGQR 106
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+++
  Bostr.6864s0056.1.p 107 QLLKNIKRRTN 117
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-3622115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3322115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3026115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNPFVWEGDQ SPQPMEGLHE VGPPPFLTKT FEMVDDPNTD QIVSWNRGGT SFVVWDLYSF  60
STILLPRHFK HSNFSSFIRQ LNTYGFRKIE AERWEFANEG FLVGQRQLLK NIKRRTNFTS  120
SSPSSHDASN ELRRENQVLM MELVSLRQQQ QTTKSYVKAM EQRIEGAEKR QRHMMSFLAR  180
AIQSPSFLHQ LLKQRDQRIK ELEDETAKRK RGSSSMSELD ALALEMQGYG KQRNMLEEED  240
HHLVAERELD DGFWEELLSD ESLASTSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-252412018125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0056.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497111e-172AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBankCP0026861e-172CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638472.11e-178heat stress transcription factor A-7a
SwissprotQ9SV121e-167HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLD7LTZ91e-166D7LTZ9_ARALL; AT-HSFA7A
STRINGBostr.6864s0056.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-169heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]