PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6251s0108.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 322aa    MW: 37941.4 Da    PI: 6.6633
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6251s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.88.1e-2549131186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e +     ++++p++++++
  Bostr.6251s0108.1.p  49 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRYKACETTEPDA---IRQQFPFYNEIQ 131
                          7********************************************************************95...56689***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006446108IPR001005SANT/Myb domain
CDDcd122031.54E-2148110No hitNo description
PfamPF138372.4E-2049133No hitNo description
PROSITE profilePS500907.88650106IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP QSTTVAMDPG GGGGERIPQW SIEETKELLG  60
IREELDQTFM ETKRNKLLWE VVAAKMADKG FVRSAEQCKS KWKNLVTRYK ACETTEPDAI  120
RQQFPFYNEI QSIFAARMQR MLWSEATEPS TSSKRKHNRF SSDEEEEEEV EEPNQDINEE  180
LLSLVETQKK ETEVITTSTS TNPRKRAKKG KGVTGSAKAE TAGSTLKEVL EEFMRQTVKM  240
EKEWRDAWEM KESEREKREK EWRRRMAELE EERAAAERRW MEREEERRLR EEARAQKRDT  300
LIDALLNKLN RDHNDGHNQG F*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6251s0108.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626801.11e-161PREDICTED: trihelix transcription factor GT-3a-like
RefseqXP_013730093.11e-161trihelix transcription factor GT-3a
SwissprotQ9SDW01e-160TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A0D3AZB11e-160A0A0D3AZB1_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZXC61e-160A0A3P5ZXC6_BRAOL; Uncharacterized protein
STRINGBostr.6251s0108.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-144Trihelix family protein