PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5763s0059.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 469aa    MW: 52743.6 Da    PI: 5.9912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5763s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.81.3e-50131411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+GfrF+Ptdeelv +yL+ k++g+k ++ +vi+evdi+k+ePwdLp  + vk++++ew fF++ d+ky++g+r nrat +gyWkatgk
  Bostr.5763s0059.1.p  13 LPVGFRFSPTDEELVRYYLRLKINGHKDDV-RVIREVDICKWEPWDLPdfSVVKTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGK 101
                          79*************************999.99***************6447888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++s +++ +g+k+tLvfy+grapkg++t W+mheyr+
  Bostr.5763s0059.1.p 102 DRNIKSGNTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 141
                          ******99******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-579164IPR003441NAC domain
PROSITE profilePS5100554.77713164IPR003441NAC domain
PfamPF023651.7E-2414140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MKEDTDVLSL ASLPVGFRFS PTDEELVRYY LRLKINGHKD DVRVIREVDI CKWEPWDLPD  60
FSVVKTTDSE WLFFCPLDRK YPSGSRMNRA TVAGYWKATG KDRNIKSGNT KIIGVKRTLV  120
FYTGRAPKGT RTCWIMHEYR ATEKDLDGTK SGQNPFVICK LFKKQDIVNG AAPEDSKSCE  180
VEPAVSSPTV ADEMKSEVEM SEVSPVFPKT EDTKPFDVAE SSLLVSSECR SENSAAEATT  240
TGLDDIDWLS YMEFDSLNQK LFSPLHSQFQ SELGSSFNGF QSGSSEQFRN HNGDHIQNQF  300
GTNDADEYMT EFLDSFLEIP YELPEWKELV QQTPDQIPHE PQNILSTCNK INDVSETGIK  360
IRTRRAQAPG CAEKFVMQGD ASRRLRLQVK LNGHKLETDN TQLQCIKKEV KDTTRETITN  420
GCGTFTRSKS KTSFIFKKIA AMGCSYKGLF RAGVVALVFV MSVCSLIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-4731657166NO APICAL MERISTEM PROTEIN
1ut4_B9e-4731657166NO APICAL MERISTEM PROTEIN
1ut7_A9e-4731657166NO APICAL MERISTEM PROTEIN
1ut7_B9e-4731657166NO APICAL MERISTEM PROTEIN
4dul_A9e-4731657166NAC domain-containing protein 19
4dul_B9e-4731657166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5763s0059.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421284.10.0PREDICTED: NAC domain-containing protein 91-like isoform X1
RefseqXP_010421286.10.0PREDICTED: NAC domain-containing protein 91-like isoform X3
SwissprotQ9LKG80.0NAC91_ARATH; NAC domain-containing protein 91
TrEMBLR0H6V50.0R0H6V5_9BRAS; Uncharacterized protein
STRINGBostr.5763s0059.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.20.0TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]