PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5022s0131.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 401aa MW: 45294.9 Da PI: 7.7917

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5022s0131.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.3	6e-18	58	149	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ + ++s++l+++ l+ fa+++g+++++ ++ l++++g+sW++ l+y+ ++ +++GW++F+ ngL++g f F++++ +++ Bostr.5022s0131.1.p 58 FLVAHVTSSNLSRDTLS----FARSNGLNERCC-EIDLMNQHGKSWTLGLRYNTANDQASIRGGWRDFCLVNGLEAGSFYRFMFVR-NGA 141 56677899999999777....******8775.**************999999***********************998.788 PP ..EEEEE- CS B3 91 elvvkvfr 98 ++++++++ Bostr.5022s0131.1.p 142 RPLLRLCS 149 89999987 PP
2	B3	71.3	1.3e-22	185	282	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+ ++ ++++++sg+l+l+++fa e+++k++e ++tl d++g W ++ + ++gr++l+kGW++F+ an+ k+gD++++++++ ++ Bostr.5022s0131.1.p 185 FLIITFKPYMFNSGQLRLSRTFAMENEIKEAE--DITLVDKNGGNWPSYVASaNDQGGRFYLAKGWRSFCVANRFKSGDTFTLEFVRGEG 272 56677899****************999777..7***********765888888***********************99 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +++++k+++k Bostr.5022s0131.1.p 273 TTPMLKFCSK 282 ********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.9E-16	51	149	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-16	54	150	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.041	58	151	IPR003340	B3 DNA binding domain
CDD	cd10017	1.68E-16	58	149	No hit	No description
Pfam	PF02362	3.3E-16	58	149	IPR003340	B3 DNA binding domain
SMART	SM01019	9.5E-23	58	151	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.9E-17	180	282	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-17	185	282	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.24	185	282	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-21	185	282	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-26	185	283	IPR003340	B3 DNA binding domain
CDD	cd10017	1.92E-14	196	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MTFHVTASRR SFCKVQCISS DEDGADEDDT WNEYSDSKNI ASKKKPRTEA ESSSKNSFLV 60 AHVTSSNLSR DTLSFARSNG LNERCCEIDL MNQHGKSWTL GLRYNTANDQ ASIRGGWRDF 120 CLVNGLEAGS FYRFMFVRNG ARPLLRLCSD TIPEGNCFKA NIKDNLLEKP SSECSERASM 180 KQSKFLIITF KPYMFNSGQL RLSRTFAMEN EIKEAEDITL VDKNGGNWPS YVASANDQGG 240 RFYLAKGWRS FCVANRFKSG DTFTLEFVRG EGTTPMLKFC SKTNVKIEQV PFDEEEETQQ 300 ETETPVEKRA RFCAEVGSSR RNQASNKSIA DSQNLQRRQP LQPCSLSDQV KRVKQILVDT 360 LTGVRRIRSE LEINEQNLEA SMLEIDALGE KVLEINKIIK *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MTFHVTASRR SFCKVQCISS DEDGADEDDT WNEYSDSKNI ASKKKPRTEA ESSSKNSFLV  60
AHVTSSNLSR DTLSFARSNG LNERCCEIDL MNQHGKSWTL GLRYNTANDQ ASIRGGWRDF  120
CLVNGLEAGS FYRFMFVRNG ARPLLRLCSD TIPEGNCFKA NIKDNLLEKP SSECSERASM  180
KQSKFLIITF KPYMFNSGQL RLSRTFAMEN EIKEAEDITL VDKNGGNWPS YVASANDQGG  240
RFYLAKGWRS FCVANRFKSG DTFTLEFVRG EGTTPMLKFC SKTNVKIEQV PFDEEEETQQ  300
ETETPVEKRA RFCAEVGSSR RNQASNKSIA DSQNLQRRQP LQPCSLSDQV KRVKQILVDT  360
LTGVRRIRSE LEINEQNLEA SMLEIDALGE KVLEINKIIK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5022s0131.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493713	0.0	AB493713.1 Arabidopsis thaliana At4g31615 mRNA for hypothetical protein, partial cds, clone: RAAt4g31615.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872304.1	0.0	B3 domain-containing protein REM2 isoform X1
Swissprot	Q3E9T2	0.0	REM2_ARATH; B3 domain-containing protein REM2
TrEMBL	A0A178UZV3	0.0	A0A178UZV3_ARATH; Uncharacterized protein
STRING	Bostr.5022s0131.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9658	15	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31615.1	0.0	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.5022s0131.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]