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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.3877s0035.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
GRAS |
| Protein Properties |
Length: 491aa MW: 54423.7 Da PI: 6.1019 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.3877s0035.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 336.8 | 3.9e-103 | 109 | 483 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87
lv+lL+++Aea + +++ l++ +Larl++l+sp + ++m+Rlaa+ft++L++ l r ++ + + +++ ++++++++a++l++++
Bostr.3877s0035.1.p 109 LVHLLVAAAEASTGANKSreLTRVILARLKDLVSPGDrTNMERLAAHFTNGLSKLLER--GNVLRPHQIRDDV-YDQADVISAFELLQNM 195
689********9986665459**************9989*******************..4455444444443.569************* PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelg 173
sP+++f++lta qaIle v+ e+rvHi+D+di++G+QW++++qaL sR+ +++ +lRiT+++++++g s +++etg+rL+ fAe++g
Bostr.3877s0035.1.p 196 SPYVNFGYLTATQAILETVKYERRVHIVDYDITEGVQWASFMQALVSRNtgSSAQHLRITALSRATNGkkSVAAVQETGRRLTAFAESIG 285
*************************************************766678*********999999999***************** PP
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleale 262
pf+f+ + +++++ +L++ +gEa+++n++l+l r+ +++ ++ ++L+ k+l+Pk+v++v++e+ + +++ F rf++ l+
Bostr.3877s0035.1.p 286 QPFSFHH-CKLDSDTFNTLSLKLLRGEAVVINCMLHLPRFSHQTPNSVI---SFLSRAKTLKPKLVTLVHEEVGLmGNQGFTYRFMDLLH 371
******9.67799999999999999***************988888777...9*********************99************** PP
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
+sa+fdslea+l+ ++ +r +vEr+++g+++ +++ + ++ e++++W ++le+ GFkp+++s + +qaklll+ ++ dgyrv
Bostr.3877s0035.1.p 372 QFSAIFDSLEAGLSIANPARCFVERVFIGPWVAKWLKRITITaDDAEVESFASWPQWLETNGFKPMEVSFANRCQAKLLLSLFN-DGYRV 460
************************************98876546899*************************************.***** PP
GRAS 352 eee.sgslvlgWkdrpLvsvSaW 373
ee ++ lvlgWk+r+Lvs+S+W
Bostr.3877s0035.1.p 461 EELgQNGLVLGWKSRRLVSASFW 483
*98789999************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MNYPYEDFLD LFFSTNTNTP ATAASTSGRG VTTSSSGYSL NDLDIDWDCD FRDVIESIMG 60
DEGAMMESES VPMLHCQEGI CNSASTGLSV ANGVSVEEPK TDESKGLRLV HLLVAAAEAS 120
TGANKSRELT RVILARLKDL VSPGDRTNME RLAAHFTNGL SKLLERGNVL RPHQIRDDVY 180
DQADVISAFE LLQNMSPYVN FGYLTATQAI LETVKYERRV HIVDYDITEG VQWASFMQAL 240
VSRNTGSSAQ HLRITALSRA TNGKKSVAAV QETGRRLTAF AESIGQPFSF HHCKLDSDTF 300
NTLSLKLLRG EAVVINCMLH LPRFSHQTPN SVISFLSRAK TLKPKLVTLV HEEVGLMGNQ 360
GFTYRFMDLL HQFSAIFDSL EAGLSIANPA RCFVERVFIG PWVAKWLKRI TITADDAEVE 420
SFASWPQWLE TNGFKPMEVS FANRCQAKLL LSLFNDGYRV EELGQNGLVL GWKSRRLVSA 480
SFWASCESNQ *
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL080252 | 0.0 | AL080252.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T12G13, partial sequence (ESSA project). |
| GenBank | AL161510 | 0.0 | AL161510.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22. |
| GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
