PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3751s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HB-other | ||||||||
Protein Properties | Length: 137aa MW: 15935.5 Da PI: 8.2321 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.1 | 5.2e-07 | 20 | 37 | 39 | 56 |
S-HHHHHHHHHHHHHHHH CS Homeobox 39 LterqVkvWFqNrRakek 56 ++ qV vWFqNr+a+ k Bostr.3751s0010.1.p 20 IKSHQVAVWFQNRKARCK 37 5678************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 2.4E-4 | 21 | 37 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-6 | 22 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.15E-5 | 23 | 48 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 0.00491 | 24 | 40 | No hit | No description |
Pfam | PF02183 | 1.1E-12 | 39 | 80 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MAPNHSQDKR DDHVLIVHII KSHQVAVWFQ NRKARCKVKQ IERDYDILKA CYESLMAKQD 60 LVILENEILK SKVLNLTEKL NQTQRNFQGK LNIFKGDETM SSSTALIPLV NEDYLTDMFM 120 NDLLSLSWWV RPSNLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3751s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024014666.1 | 3e-48 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A1J3EYU0 | 7e-47 | A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1J3HX77 | 8e-47 | A0A1J3HX77_NOCCA; Homeobox-leucine zipper protein HAT5 | ||||
STRING | Bostr.3751s0010.1.p | 5e-97 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16382 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-20 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3751s0010.1.p |