PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0123.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 380aa    MW: 40206.4 Da    PI: 8.1256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0123.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-0792115125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          +kt+lC+ f++ GtC+y  +C+FaH
  Bostr.3359s0123.1.p  92 FKTKLCCKFRA-GTCPYITNCNFAH 115
                          69*********.************* PP
2zf-CCCH42.61e-13256281126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Bostr.3359s0123.1.p 256 WKTRICNKWEITGYCPFGAKCHFAHG 281
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-789122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1389124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3891118IPR000571Zinc finger, CCCH-type
SMARTSM003560.004491117IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-592115IPR000571Zinc finger, CCCH-type
SMARTSM003560.47172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-8173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-17249285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-10251286IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178255283IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11256281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSHHRRDSGG DVVHVIPTNN PPPDNWFPNL GDSAVWATED DYNRAWAVNP DNISGDNSGP  60
PNKKTRGSPS SSSATTTSAA SNRTKAIGKM FFKTKLCCKF RAGTCPYITN CNFAHTVEEL  120
RRPPPNWQEI VAAHDEERSG GMGTPTVAVA ELPREEFQIP SLVSSTAESG RSFKGRHCKK  180
FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGGGG GSGGGSGSGG GGNNNVVVLG  240
GGGSGSGIQI VKPSNWKTRI CNKWEITGYC PFGAKCHFAH GAAELHRFGG GLVEGEGKDG  300
VSPNPDTKQT GQNPKGHSDT TTFLSPGVPH HADASYHSGV ALQRASSAVT QKPGIRTHQK  360
WKGPAKISRI YGDWIDDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0123.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478659.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
RefseqXP_010499780.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLD7KHJ60.0D7KHJ6_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.3359s0123.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein