PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0109.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 284aa    MW: 32980.7 Da    PI: 4.7564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.92.9e-5161401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r nratksgyWkatgk
  Bostr.3359s0109.1.p   6 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGK 94 
                          79****************************.99**************95334556888******************************** PP

                  NAM  89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++++      +++++g++ktLvfy grap g +tdWvmheyrl
  Bostr.3359s0109.1.p  95 DRKIVCQpsssssSSSVIGCRKTLVFYLGRAPFGGRTDWVMHEYRL 140
                          ******98887777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-584164IPR003441NAC domain
PROSITE profilePS5100556.386164IPR003441NAC domain
PfamPF023653.5E-287140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVGSSLPPGF RFHPTDEELV GYYLHRRNEG LEIELEIIPL MDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIVC QPSSSSSSSS VIGCRKTLVF  120
YLGRAPFGGR TDWVMHEYRL CDNDTSQGSL NFKGDFALCR VIKRNEHTVK KCETNSPEVS  180
DEPLSNNVET FCQASDLEKG SCDASNTRWS STDFILESSF QENSQSQTEE DSGFQIFASP  240
EFEYPPEFFA DLNFDWEMEN PFMFDYHPEA HMNNEVMNYH ILR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-51517019174NAC domain-containing protein 19
3swm_B2e-51517019174NAC domain-containing protein 19
3swm_C2e-51517019174NAC domain-containing protein 19
3swm_D2e-51517019174NAC domain-containing protein 19
3swp_A2e-51517019174NAC domain-containing protein 19
3swp_B2e-51517019174NAC domain-containing protein 19
3swp_C2e-51517019174NAC domain-containing protein 19
3swp_D2e-51517019174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0109.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-111CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D141e-111AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890994.10.0NAC domain-containing protein 86
SwissprotQ9LS241e-90NAC96_ARATH; NAC domain-containing protein 96
TrEMBLD7KHL20.0D7KHL2_ARALL; ANAC011
STRINGBostr.3359s0109.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-176NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]