PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0047.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 659aa    MW: 72908.2 Da    PI: 5.5883
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.5e-2961145187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k++k++ke++++r++++   +++f+qlea
  Bostr.3359s0047.1.p  61 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYHKRTKETRGGRHDGK--AYKFFSQLEA 145
                          8*********************************************************************86555..5******985 PP
2trihelix104.38.9e-33430514186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k e+laLi++r+ me r++++  k+ lWee+s  m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
  Bostr.3359s0047.1.p 430 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 514
                          8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.86454118IPR017877Myb-like domain
SMARTSM007170.007658120IPR001005SANT/Myb domain
PfamPF138372.3E-1960146No hitNo description
CDDcd122031.11E-2560125No hitNo description
SMARTSM007170.011427489IPR001005SANT/Myb domain
PfamPF138375.6E-22429514No hitNo description
PROSITE profilePS500906.667429487IPR017877Myb-like domain
CDDcd122037.12E-30430494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010090Biological Processtrichome morphogenesis
GO:0030308Biological Processnegative regulation of cell growth
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0042631Biological Processcellular response to water deprivation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:2000038Biological Processregulation of stomatal complex development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MEQVGGGGGG GNEVVEEASP ISSRPPANLE ELMRFSAAAD DGGGLGGGGG GGSASSSSGN  60
RWPREETLAL LRIRSDMDST FRDATLKAPL WEHVSRKLLE LGYKRSAKKC KEKFENVQKY  120
HKRTKETRGG RHDGKAYKFF SQLEALNTTP PPSSSLDVTP LSVANPMLMP SSSSSPFPVF  180
SQPQPPQTHT VSFTPTPPPP PLPSMGPTFP GVTFSSHSSS TASGMGSDDD DDDDMDVDQA  240
NIAGSSSRKR KRGNRGGGKM MELFEGLVRQ VMQKQAAMQR SFLEALEKRE QERLDREEAW  300
RRQEMSRLAR EHELMSQERA ASASRDAAII SLIQKITGHT IQLPPSLSSQ THQPPYQPPQ  360
PPPAAKRAQE PPLSTAQSQL QQPIMAIPQQ QILPPPHLPH QPEQKQQQQQ QQQQEMIVSS  420
EQSSLPSSSR WPKAEILALI NLRSGMEPRY QDNVPKGLLW EEISTSMKRM GYNRNAKRCK  480
EKWENINKYY KKVKESNKKR PQDAKTCPYF HRLDLLYCNK VLGGGGGGSS TSGLPQDQKQ  540
SPVSAMKPPQ GVVNVQPHGS ASSEEEEPIE ESPQGTEKPE DLVMSEMMQQ QQQDTMIGEY  600
ENIEESHNYN NIEEEEEEMD EEELDEDEKS AAFEIAFQSP ANRGGNGHTE PPFLTMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00177DAPTransfer from AT1G33240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0047.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210450.0AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270350.0AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032150.0AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461138.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
RefseqXP_019091258.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X2
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A0D3CS580.0A0A0D3CS58_BRAOL; Uncharacterized protein
STRINGBostr.3359s0047.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-117GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]