PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3148s0085.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 278aa MW: 32366.6 Da PI: 6.644 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.8 | 1.3e-36 | 19 | 112 | 1 | 103 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 aFl+k+y+i+ed+++++++sws+++nsf+++++e+fa +Lp+ Fkh+nf+SFvRQLn+YgFkk+++e+ weF++++F kg+ Bostr.3148s0085.1.p 19 AFLTKTYNIVEDSSTNDIVSWSRDNNSFIIWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKINTER---------WEFANEYFLKGQ 99 69****************************************************************999.........************ PP XXXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkkse 103 ++ll++ikr+k++ Bostr.3148s0085.1.p 100 RHLLKNIKRRKTS 112 **********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.62E-35 | 16 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.3E-36 | 16 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.7E-54 | 16 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-31 | 20 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 58 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 59 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEYALSVPLE GLKETGPTAF LTKTYNIVED SSTNDIVSWS RDNNSFIIWE PETFALICLP 60 RCFKHNNFSS FVRQLNTYGF KKINTERWEF ANEYFLKGQR HLLKNIKRRK TSSQTQMQSL 120 KGGRFGLQGE IEELRRDRVA LLVELERQRR KHETMKTYLH LMEEKLKVTE VKQEMMLNFL 180 LKKIKKPSFL EGLRKRKKQG INNREQRQEM MSSHGVEVHE TFVKAEPEEY VNDTADQFGG 240 VFDYGDELHI ASMEDQGQEG DEMEMDSEGS ESGRVSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 4e-23 | 19 | 114 | 4 | 110 | Heat shock factor protein 2 |
5d8l_B | 4e-23 | 19 | 114 | 4 | 110 | Heat shock factor protein 2 |
5d8l_D | 4e-23 | 19 | 114 | 4 | 110 | Heat shock factor protein 2 |
5d8l_F | 4e-23 | 19 | 114 | 4 | 110 | Heat shock factor protein 2 |
5d8l_H | 4e-23 | 19 | 114 | 4 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 108 | LKNIKRR |
2 | 193 | 197 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00541 | DAP | Transfer from AT5G43840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3148s0085.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ447035 | 1e-152 | DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds. | |||
GenBank | DQ653345 | 1e-152 | DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863630.1 | 1e-170 | heat stress transcription factor A-6a | ||||
Swissprot | Q1PDN3 | 1e-159 | HFA6A_ARATH; Heat stress transcription factor A-6a | ||||
TrEMBL | D7MNK4 | 1e-169 | D7MNK4_ARALL; AT-HSFA6A | ||||
STRING | Bostr.3148s0085.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15683 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43840.1 | 1e-156 | heat shock transcription factor A6A |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3148s0085.1.p |
Publications ? help Back to Top | |||
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