PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.30275s0365.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 401aa MW: 45906.2 Da PI: 4.9317 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.1 | 1.6e-34 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+ weF+++ F +g+ Bostr.30275s0365.1.p 16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQ 95 9**************************************************************99988.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 +l+++i+r+k Bostr.30275s0365.1.p 96 PHLMKNIHRRKP 107 *********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.08E-35 | 11 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.6E-63 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-37 | 13 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.0E-31 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-19 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDENNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK 60 HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKPVHS HSLPNLQAQQ 120 NPLTDSERLR MKNQIERLTK EKEGLLEDLL KQEEEREGFE MQVKELKERL QHMEKRQKTM 180 VSFVSQVLEK PGLALNLSPC VPETNERKRR FPRIGFLPDE PMLEENQTCV VVREEGSTSP 240 SSHTTEHQVE QLESSIAIWE NLVSDSCESM LQSKSMMALD VDESSTCPES PPLSCIQLSI 300 DTRLRSPPSP RIIDMNSEPD ISKDQNTVAA PPPPPPPPAA GANDVFWQQF FSENPGSTEQ 360 REVQSERKDD KDKAEDRSEK CWWNSRNINT ITEQLGHLAS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-23 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-23 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-23 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.30275s0365.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY125512 | 0.0 | AY125512.1 Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds. | |||
GenBank | BT001049 | 0.0 | BT001049.1 Arabidopsis thaliana At4g18880/F13C5_50 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283847.1 | 0.0 | heat stress transcription factor A-4a | ||||
Refseq | XP_023634065.1 | 0.0 | heat stress transcription factor A-4a | ||||
Refseq | XP_023634066.1 | 0.0 | heat stress transcription factor A-4a | ||||
Refseq | XP_023634067.1 | 0.0 | heat stress transcription factor A-4a | ||||
Swissprot | O49403 | 0.0 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | R0GWP5 | 0.0 | R0GWP5_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.30275s0365.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 0.0 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Phytozome | Bostr.30275s0365.1.p |
Publications ? help Back to Top | |||
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