PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0270.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 534aa    MW: 59489.1 Da    PI: 5.6177
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.6e-27294347256
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           ++++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  Bostr.30275s0270.1.p 294 KKVDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 347
                           689*****************.********************************96 PP
2Response_reg25.56.8e-104013018109
                           HHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS-- CS
          Response_reg  18 lekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfd 103
                           le+ +y +v++++d +eal  + ++   +++ ++ ++     +G+++l+    +++ lp i+ ++    +++ +++ +Ga +fl Kp +
  Bostr.30275s0270.1.p  40 LESMDY-IVTTFTDETEALSAIFKNPesFHIAIVEVNTNAeKEGFKFLEA---AKDVLPTIMTSTDHCITTTMKCIALGAVEFLQKPLS 124
                           67899*.************999555556*********9997899999875...55699******9999********************* PP

                           HHHHHH CS
          Response_reg 104 peelvk 109
                           pe+l +
  Bostr.30275s0270.1.p 125 PEKLKN 130
                           ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011023.28922136IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.61E-729135No hitNo description
SuperFamilySSF521723.98E-1229137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-1337143No hitNo description
PfamPF000722.1E-639130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129416.055290349IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-26291349IPR009057Homeodomain-like
SuperFamilySSF466891.61E-18292350IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-25294347IPR006447Myb domain, plants
PfamPF002491.5E-7296344IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MVITANDLSK WENFPKGLKV LLLLNGDGDD FSAAETLSKL ESMDYIVTTF TDETEALSAI  60
FKNPESFHIA IVEVNTNAEK EGFKFLEAAK DVLPTIMTST DHCITTTMKC IALGAVEFLQ  120
KPLSPEKLKN IWQHVVHKAF NDGGSNVSGS LKPVKESVVS MLHLDTDMTI DEKDPAPSTP  180
QLKQVSRLLD GDCQENINCS MENVNSSIEK DNMEDQDIGE YKSVDTTNRE LDDDKVVVKE  240
ERGDSEKEEE EGETRDLESE KTDSVNCHKK EDDTKPINKS SGIKNFSGNK TSRKKVDWTQ  300
ELHKKFVQAV EQLGVDQAIP SRILELMKVD GLTRHNVASH LQKFRMHRRN ILPKEDHNHR  360
WVQSRENHRP IQRNYNGFQQ QQRPVMAYPV WGLPSIHPAG AIPPLWPPPL SSCQPPPWHW  420
KPPYPTMNGN AWGCAVGPPV TGSYFTPSNT TASGFQYTNG AETGYKIMPA SQPDEEMIDQ  480
VVKEAISKPW LPLPLGLKPP SAESVLAELS RQGISAVPSS SSSCIINGSH RLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16293351563ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439912.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010439913.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010439915.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLD7MCX70.0D7MCX7_ARALL; Pseudo-response regulator 2
STRINGBostr.30275s0270.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]