PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.30275s0239.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 462aa MW: 51436.4 Da PI: 4.7158 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.6 | 3.2e-36 | 38 | 129 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y+++ed++++ ++sws ++nsf+v+d+ ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+ Bostr.30275s0239.1.p 38 FLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQ 117 9********************999*****************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++i r+ks Bostr.30275s0239.1.p 118 KHLLKTISRRKS 129 **********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-39 | 32 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.5E-63 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-35 | 35 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.3E-20 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-32 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-20 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MDGVTGGRTD TGESVTAPPP RNPHPATLLS ANALPPPFLS KTYDMVEDPA TDAIVSWSPT 60 NNSFIVWDPP EFSRDLLPKH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LKTISRRKSV QGHGSNSQSQ QLSQGQGSMA ALSSCVEVGK FGLEEEVEQL KRDKNVLMQE 180 LVKLRQQQQT TDNKLQVMVK RLQAMEQRQQ QIMSFLAKAI RNPTFLSQFI QTDTNMHVTE 240 ANKKRRLTED TTDADAENLS HNHNSAASDG RIVKYQPLRS DSMMRNMMKT DDEYPFLDGF 300 SSSNRVSAVT LQEVLPTTSG QSQAYAPAAS GQHLSYLPST STPLPDTLMP AIPRMPQTTQ 360 DSINDFPTEN YMDTDKNVSE PFISPSPFLD GGSVPIQLDG IPEDPDIDEL MSTCEFFEEC 420 LAESPVLGDA TTLENSNNTN GRHMDKLVEE LGLLTSETEQ L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 9e-28 | 36 | 127 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-27 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.30275s0239.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229347 | 0.0 | AK229347.1 Arabidopsis thaliana mRNA for heat shock transcription factor HSF1, partial cds, clone: RAFL16-59-L13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020873200.1 | 0.0 | heat stress transcription factor A-1a | ||||
Swissprot | P41151 | 0.0 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | D7M9G0 | 0.0 | D7M9G0_ARALL; Heat shock factor | ||||
STRING | Bostr.30275s0239.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15101 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 0.0 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.30275s0239.1.p |
Publications ? help Back to Top | |||
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