PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2983s0050.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 342aa    MW: 39404.1 Da    PI: 7.1775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2983s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-191562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
  Bostr.2983s0050.1.p 15 KGPWTPEEDKKLIDYINKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding521.6e-1668112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
  Bostr.2983s0050.1.p  68 RGRFSFEEEETIIQLHSIMGNK-WSAIAARLP-GRTDNEIKNFWNTH 112
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-25765IPR009057Homeodomain-like
PROSITE profilePS5129424.7291066IPR017930Myb domain
SuperFamilySSF466899.9E-3212109IPR009057Homeodomain-like
SMARTSM007176.9E-141464IPR001005SANT/Myb domain
PfamPF002495.0E-171562IPR001005SANT/Myb domain
CDDcd001678.18E-131762No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2666117IPR009057Homeodomain-like
PROSITE profilePS5129419.68667117IPR017930Myb domain
SMARTSM007172.7E-1667115IPR001005SANT/Myb domain
PfamPF002495.1E-1568112IPR001005SANT/Myb domain
CDDcd001678.24E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRSPCCEKK NGLKKGPWTP EEDKKLIDYI NKHGYGNWRT LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSIMGNKW SAIAARLPGR TDNEIKNFWN THIRKRLLKM  120
GIDPVTHRPR LDLLDISSIL NSSLFNSSHH NHQHMNMSRL MMGDGHHQPL VSPEILKLAT  180
SLFSNQNNPT NTHENHTVNQ TEVNQYQTGY NMTGNQELQY RFPIMDQFTE FQDLMPMKTT  240
VQDSMPSFPS NYDDDYSKSN SVLEPFYSDF ASVLTTLSST PTSLNSSSTT YINSSTCSTE  300
DEKESYYSNN IMSTSEIPDY SFDVNGLLQF QETKNHWDRV M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00429DAPTransfer from AT4G05100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2983s0050.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3869320.0AF386932.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0011820.0BT001182.1 Arabidopsis thaliana Unknown protein (At4g05100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431743.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9M0Y50.0MYB74_ARATH; Transcription factor MYB74
TrEMBLR0GVX20.0R0GVX2_9BRAS; Uncharacterized protein
STRINGBostr.2983s0050.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-162myb domain protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xu R, et al.
    Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis.
    J. Exp. Bot., 2015. 66(19): p. 5997-6008
    [PMID:26139822]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]