PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.29827s0158.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 341aa MW: 39524.9 Da PI: 6.6773 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.2 | 3.3e-16 | 9 | 48 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r++tf kR++g++KK +EL +LC+++++ +i+s+ Bostr.29827s0158.1.p 9 IANESSRKITFMKRKKGMMKKLHELTTLCGVQACAVIYSP 48 89************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.713 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-7 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-19 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-21 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.03E-19 | 2 | 83 | No hit | No description |
Pfam | PF00319 | 1.9E-16 | 9 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-7 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MRKLKLSLIA NESSRKITFM KRKKGMMKKL HELTTLCGVQ ACAVIYSPYL SAPEAWPSKE 60 GAEEVVSKFM EMPMTARAKK MMNQETYLRE MIAKVKDQVD KLALENRELQ VRQFMFDCLE 120 GKMSEYRYGA KDLHDLQWYI DHYIDQLTRR IQILAQNGES SSFPPPLPVG VADAAAVSAA 180 ASGFYDHIQY QNMNMNQTHQ QETIQHHVPI NSYDIIQYRN MDMNQNQQEP VQYQTPTDLY 240 DHIQQGNYNN MTWNDQDMNL DLNHNLNLNL HLNSNQYMNQ QQSFMGMMME QHMGGHASIP 300 FMDGNHNYNY HQRPIVDLTV STHMPSVTTG VYAPYINYNL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 29 | RKITFMKRKKGMMKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.29827s0158.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010493922.1 | 1e-144 | PREDICTED: agamous-like MADS-box protein AGL36 | ||||
Swissprot | Q7XJK6 | 1e-111 | AGL36_ARATH; Agamous-like MADS-box protein AGL36 | ||||
TrEMBL | R0H400 | 1e-134 | R0H400_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.29827s0158.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 1e-97 | AGAMOUS-like 36 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.29827s0158.1.p |
Publications ? help Back to Top | |||
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