PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.29827s0156.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 226aa MW: 25913.1 Da PI: 10.3683

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.29827s0156.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59	5.9e-19	10	49	2	41
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ien++ r+ tf kRr+g+lKKA+EL +LCd+ ++vi+ s Bostr.29827s0156.1.p 10 FIENETARKSTFKKRRKGVLKKAHELATLCDVPICVIVNS 49 8************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.68	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-25	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.69E-25	2	85	No hit	No description
SuperFamily	SSF55455	1.01E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.6E-18	10	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-10	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MTRKKVKMTF IENETARKST FKKRRKGVLK KAHELATLCD VPICVIVNSA YESNPVVWPS 60 RETANKVVSQ WRMMSVMDKT KKMVNQETFL QQRITKATES WKKLRKENKE LEMKNIMFDC 120 LSGKTSVSRV EKSDLRDFCC VIEQYLKDIN RRMELLKRND ESSSSLVSAA AATTNPPLAT 180 TSSVMPMVEM GSSSVGFYDR IRDQIQNTLN MKHTNTDLDL NKKQL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKMTFIENETARKSTFKKRR
2	21	25	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.29827s0156.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB830690	0.0	AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421527.1	1e-133	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	2e-55	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	S6B3Z0	1e-135	S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35
STRING	Bostr.29827s0156.1.p	1e-166	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	1e-113	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Bostr.29827s0156.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]