PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0025.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 340aa    MW: 37405.9 Da    PI: 4.2595
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.98.1e-112565444
                          -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                          e k +r vt skRr +++ KA  L+ L +a+vav + s++ 
  Bostr.29827s0025.1.p 25 ETKQQRAVTCSKRRRTVFSKAADLCLLFGANVAVFVTSPSE 65
                          77999********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.4841464IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-181473IPR002100Transcription factor, MADS-box
CDDcd002662.06E-241594No hitNo description
SuperFamilySSF554555.36E-1716107IPR002100Transcription factor, MADS-box
PfamPF003193.2E-102565IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MPSSSVSESA MKKGTKRKIE IKKRETKQQR AVTCSKRRRT VFSKAADLCL LFGANVAVFV  60
TSPSESSDVV YSFSGYTPAY EIADCYLKNK PPPKISNPQS KLGFWWEDPD LYHSCDDLSE  120
LNIIEDRIQR VKKHVMACLE KKEKSQFVSD SDQNPSTCSL DEDCGGSSAQ TASNFGPNPS  180
SSVHECCGDQ TLASFHGDQN PNSTSKASSQ IVSFDDQNSY SSLDQINGGS SSQVSSFDPN  240
PSSEIQGGSS SSDKTCCFEI GGLGCETEEE KNQINLLQET QTQAIVNPDD ESWLWNDLFN  300
DNVFGLNSDF CLDTTNDMIN LGEFNEEELE WLDLSESVH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12138KKRETKQQRAVTCSKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0025.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937621e-139AB493762.1 Arabidopsis thaliana At5g27130 gene for hypothetical protein, partial cds, clone: RAAt5g27130.
GenBankCP0026881e-139CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankTM021B041e-139AF007271.1 Arabidopsis thaliana BAC TM021B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198065.21e-146AGAMOUS-like 39
TrEMBLF4K2U31e-144F4K2U3_ARATH; AGAMOUS-like 39
STRINGBostr.29827s0025.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.11e-130AGAMOUS-like 39