PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0002.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family FAR1
Protein Properties Length: 687aa    MW: 78521.2 Da    PI: 6.0505
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.27.5e-2574165190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 
                           ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke     ++w+v+++++ Hn
  Bostr.29827s0002.1.p  74 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEVvdgVSHWYVSQFSNVHN 161
                           69********************8888.*******************************************99867789*********** PP

                  FAR1  87 Hela 90 
                           Hel 
  Bostr.29827s0002.1.p 162 HELL 165
                           **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2274165IPR004330FAR1 DNA binding domain
PfamPF105511.0E-22297390IPR018289MULE transposase domain
PROSITE profilePS509669.52556604IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7576604IPR007527Zinc finger, SWIM-type
SMARTSM005755.4E-7579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MALKPFNNIW IRRQQCPCGD WKCYIRFGGD ESSCQVTKSE LESTTTTTAV SSLYDTVYMP  60
YVGQIFRTDD EAFEYYSTFA RKSGFSIRKA RSTESQNLGV YRRDFVCYRS GFNQPRKKAN  120
VEHPRERKSV RCGCDAKLYL TKEVVDGVSH WYVSQFSNVH NHELLEDDQV RLLPAYRKIQ  180
QADQDRILLL SKAGFPVNRI VKLLELEKGV QAGQLPFIEK DVRNFVRACK KSVSENDAFL  240
SEKRESDTLE LLESCKALAE RDMDFAYDCT SDENQKVENL AWALGDSIRA YSLFGDVVVF  300
DTTYRSIPYG LLLGVFFGID NNGKAILLGC VLLQDESCSS FTWALQTFVR FMRGQHPQTI  360
ITDIDTGLKD AIASEMPNTN HVVFMWHIVS KLASWFSQTL GSHYDEFRAG FEMLCRAGNL  420
DEFEQQWDLL VTRFGLVPDR HAALLYSCRA SWSPCYIREH FVAQTMTPEF NLSIDSFLKR  480
IVAGPTCMQV LLEEVSAAAS LAKQISPRFP YPSLKTSMPM EDHARGVLTP YAFSVLQNEM  540
VLSVQYAVSE MANGPYIVHH FKKMEGECCV IWNPENEEIQ CSCKEFEHSG ILCRHTLRVL  600
TMKNCFHIPD QYFLLRWRQE SPHVAAENQN DQGIGDDCSQ TFHSLTETLL TESMISKDRL  660
DYANQELSLL IDRVRNMAPA NSLYQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D30.0AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878381.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_020878382.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLR0FDR20.0R0FDR2_9BRAS; Uncharacterized protein
STRINGBostr.29827s0002.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]