PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29505s0037.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family EIL
Protein Properties Length: 577aa    MW: 65555.5 Da    PI: 6.1016
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29505s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3511.63.5e-156484301354
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                           +el+krmw+d+m+lkrlke++ +   +ke  ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYg ipekgkpv+g+ d
  Bostr.29505s0037.1.p  48 DELEKRMWRDKMRLKRLKEQQSK---SKEG-VDGSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGVIPEKGKPVTGSLD 132
                           79******************998...4777.9999****************************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
                  EIN3  90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                           +Lr+WWk+kv+fdrngpaai+kyqa+n+il+g++++++    ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+Gke
  Bostr.29505s0037.1.p 133 NLREWWKDKVRFDRNGPAAIAKYQAENNILGGRNDCNSFVGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPNGKE 221
                           ************************************999************************************************** PP

                           HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX CS
                  EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss 265
                           +ww++lgl+++qg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee  +++++++  ++
  Bostr.29505s0037.1.p 222 DWWPQLGLPNEQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVVARELYPEscPP 310
                           *************************************************************************************6522 PP

                           ...XXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXX...........................XXXXXXXXXXXXXXXXXXXXX CS
                  EIN3 266 ...slrkqspkvtlsceqkedve.gkkeskikhvqavktta...........................gfpvvrkrkkkpsesakvssk 323
                              s++ +s ++ +++ +++dve  +ke+   +v+++k +                            +++++rkrk +++ + +++++
  Bostr.29505s0037.1.p 311 lssSSSLGSGSLLINDCSEYDVEgFEKEQASFDVEERKPEIvmmnpptnfgiakmqhfpikeevattgNLEFTRKRKPNNDMNVMIMDR 399
                           5535555****************8788888789999998779***********************************999999999*** PP

                           ......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                  EIN3 324 evsrtcqssqfrgsetelifadknsisqney 354
                            + +tc++ q+++s+++l+f+d++s++++++
  Bostr.29505s0037.1.p 400 PAGYTCENGQCPHSKMNLGFQDRSSRDNHQM 430
                           *****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.4E-12848297No hitNo description
Gene3DG3DSA:1.10.3180.105.1E-75173307IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.28E-61176300IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MMFNEMGMYG NMDFFSSSTS LDGCPLPQAE QEPLVEDVDY TDDEMDVDEL EKRMWRDKMR  60
LKRLKEQQSK SKEGVDGSKQ RQSQEQARRK KMSRAQDGIL KYMLKMMEVC KAQGFVYGVI  120
PEKGKPVTGS LDNLREWWKD KVRFDRNGPA AIAKYQAENN ILGGRNDCNS FVGPTPHTLQ  180
ELQDTTLGSL LSALMQHCDP PQRRFPLEKG VSPPWWPNGK EDWWPQLGLP NEQGPPPYKK  240
PHDLKKAWKV GVLTAVIKHM SPDIAKIRKL VRQSKCLQDK MTAKESATWL AIINQEEVVA  300
RELYPESCPP LSSSSSLGSG SLLINDCSEY DVEGFEKEQA SFDVEERKPE IVMMNPPTNF  360
GIAKMQHFPI KEEVATTGNL EFTRKRKPNN DMNVMIMDRP AGYTCENGQC PHSKMNLGFQ  420
DRSSRDNHQM VCPYRDNCLA YGATKFHMSE MKPVAPQQSV QSIGLSGFGV PENGQKMITE  480
LMAMYDRNVQ SNQTPPLMEN QSMTHDAKAA QNQLLNFNSG NQMFMQQGMN SGINNRFQMV  540
FDSTPFDMAA FDYRDDWQTG AMEGMGKQQQ DVSIWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-861753072134Protein ETHYLENE INSENSITIVE 3
4zds_B1e-861753072134Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29505s0037.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0056230.0AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBankAY0651910.0AY065191.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050; T20P8.10) mRNA, complete cds.
GenBankBT0033440.0BT003344.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884280.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH00.0EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLD7LFJ40.0D7LFJ4_ARALL; Uncharacterized protein
STRINGBostr.29505s0037.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21352879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.10.0ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]