PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29246s0042.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 379aa    MW: 42242.2 Da    PI: 8.3168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29246s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017137160123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           + C+ Cg+ F+   +L++Hi   H
  Bostr.29246s0042.1.p 137 FHCNSCGEIFPKINLLESHIAIkH 160
                           78******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.058137165IPR007087Zinc finger, C2H2
PROSITE patternPS000280139160IPR007087Zinc finger, C2H2
SuperFamilySSF563991.11E-11162377No hitNo description
Gene3DG3DSA:3.90.228.103.4E-10167377IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAARKLGSLL RQYFFSLCFL FLGCFFFPKG GDCKQKRRKK KLRTVSLSSS GSALSSSWTY  60
LKRVFLSTTR ISKSRNQTHP NGGTLTSARS SQNSLVTLVQ PDTTNQPDPE TRIQQTEFEI  120
SSYDNIPLFF PLRNEIFHCN SCGEIFPKIN LLESHIAIKH AVSELIAGES STNIVNIIFK  180
SGWPEQGNYK SPEINRILKI HNSQKILTRF EEYREFVKAK AARSRWDDER CVADGNELLR  240
FYCSTFMCDL GQNGKSNLCG HQYCSICGII GSGFSPKLDG IATFATGWRG HVAVPEEVEE  300
EFGFMNVKRA MLVCRVVAGR VGCDLIDDDL DKSDGGGYDS LVGQSGNKSG ALLRIDDDEL  360
LVFNPRAVLP CFVIVYTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RRKKKL
23642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29246s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054960.0AC005496.3 Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete sequence.
GenBankAY0843790.0AY084379.1 Arabidopsis thaliana clone 106148 mRNA, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885173.10.0uncharacterized protein LOC9317130
TrEMBLD7LLB70.0D7LLB7_ARALL; Zinc finger family protein
STRINGBostr.29246s0042.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.10.0C2H2 family protein