PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.29044s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | SAP | ||||||||
Protein Properties | Length: 449aa MW: 49345.4 Da PI: 6.6252 | ||||||||
Description | SAP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SAP | 742.2 | 4.2e-226 | 1 | 447 | 1 | 454 |
SAP 1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsr 88 ms+ssss++ ++g + s+g +e+ps sr+r a +vwpePfle+la+qva+das+s+G laaa+alanvf+v++tw+avsr Bostr.29044s0040.1.p 1 MSTSSSSNNG--------NSGAGGSGGVFEAPSPSRPRrGASDVWPEPFLESLAVQVAVDASSSAGLLAAAPALANVFRVSTTWQAVSR 81 5555553333........33444566899******9986899*********************************************** PP SAP 89 sdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdl 177 sd+lwq l+r++W+ t+l++dtWr+e+iyrhrtarnfrtr+++y+tlqfdp+dvde +d+lsCrcl+lsd ylaaGfadG+vrlf l Bostr.29044s0040.1.p 82 SDHLWQLLSRQVWASTHLMHDTWRDEFIYRHRTARNFRTRNHTYFTLQFDPSDVDE---PDSLSCRCLTLSDLYLAAGFADGTVRLFLL 167 ****************************************************9998...689*************************** PP SAP 178 etrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpG 266 ++rlhv+t++p rdr+GrfsravsGivisdsr++fat+dGdihva+idg ++++r+a++Gd+vndGalvdf+G+grWwvGl+aGvpG Bostr.29044s0040.1.p 168 TNRLHVRTLRPPLRDRFGRFSRAVSGIVISDSRITFATMDGDIHVAEIDG--VGHTRTAYAGDIVNDGALVDFTGCGRWWVGLFAGVPG 254 **************************************************..66*********************************** PP SAP 267 rafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasn 354 rafhiWd+++ee+ fvGGsltdPeavmGWh+ltelt+++Gr+r++++etavaCt+++++v+dlrnqgv+++e+ee+ rGl+v+++da++ Bostr.29044s0040.1.p 255 RAFHIWDCNSEETAFVGGSLTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWKIMVIDLRNQGVIIGEDEEQrRGLMVTGFDAND 343 **********************************************************************99888779*********** PP SAP 355 eayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavss 442 eayv++dsrG+a+vrrv++ ++vc+frv+g aqr+v+gCvn+ +al++agg++rvWe+e+ e ylys+rervgev+a+vad+rhvav+s Bostr.29044s0040.1.p 344 EAYVRMDSRGNASVRRVNTQHTVCEFRVSGaAQRRVMGCVNRLHALMCAGGIMRVWEVERGE-YLYSIRERVGEVDAIVADERHVAVAS 431 ******************************9*****************************77.************************99 PP SAP 443 s....dgtihlldfga 454 s +++ihl+dfga Bostr.29044s0040.1.p 432 SsstaQSIIHLWDFGA 447 86777899*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 5.23E-5 | 65 | 116 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 4.2E-5 | 65 | 131 | No hit | No description |
SuperFamily | SSF50978 | 6.87E-11 | 139 | 318 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.1E-8 | 142 | 228 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.1E-8 | 351 | 445 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 6.87E-11 | 362 | 444 | IPR017986 | WD40-repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0030163 | Biological Process | protein catabolic process | ||||
GO:0046622 | Biological Process | positive regulation of organ growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSTSSSSNNG NSGAGGSGGV FEAPSPSRPR RGASDVWPEP FLESLAVQVA VDASSSAGLL 60 AAAPALANVF RVSTTWQAVS RSDHLWQLLS RQVWASTHLM HDTWRDEFIY RHRTARNFRT 120 RNHTYFTLQF DPSDVDEPDS LSCRCLTLSD LYLAAGFADG TVRLFLLTNR LHVRTLRPPL 180 RDRFGRFSRA VSGIVISDSR ITFATMDGDI HVAEIDGVGH TRTAYAGDIV NDGALVDFTG 240 CGRWWVGLFA GVPGRAFHIW DCNSEETAFV GGSLTDPEAV MGWHTLTELT TSLGRLRISG 300 NETAVACTRW KIMVIDLRNQ GVIIGEDEEQ RRGLMVTGFD ANDEAYVRMD SRGNASVRRV 360 NTQHTVCEFR VSGAAQRRVM GCVNRLHALM CAGGIMRVWE VERGEYLYSI RERVGEVDAI 420 VADERHVAVA SSSSTAQSII HLWDFGAL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.29044s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ223125 | 0.0 | AJ223125.1 Arabidopsis thaliana mRNA for sterile apetala. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198426.1 | 0.0 | Transducin/WD40 repeat-like superfamily protein | ||||
Swissprot | Q9FKH1 | 0.0 | SAP_ARATH; Transcriptional regulator STERILE APETALA | ||||
TrEMBL | A0A178UR36 | 0.0 | A0A178UR36_ARATH; SAP | ||||
STRING | Bostr.29044s0040.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11018 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35770.1 | 0.0 | SAP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.29044s0040.1.p |
Publications ? help Back to Top | |||
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