PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2902s0211.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 205aa MW: 23766.9 Da PI: 8.7744 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l d+vk G+g+W++Ia++ g++R++k+c++rw +yl Bostr.2902s0211.1.p 18 KGLWTVEEDKILMDYVKAQGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 65 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 61.5 | 1.7e-19 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l Bostr.2902s0211.1.p 71 RGNFTEQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 116 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.05 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.55E-31 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-14 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-10 | 21 | 65 | No hit | No description |
PROSITE profile | PS51294 | 28.737 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-19 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-18 | 71 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 73 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.97E-13 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0090377 | Biological Process | seed trichome initiation | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MRKKVSSSGE EGNNEYKKGL WTVEEDKILM DYVKAQGKGH WNRIAKKTGL KRCGKSCRLR 60 WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV PGRTDNQVKN YWNTHLSKKL 120 GIKDPKTKQS NGDIVYQINL PNPTETSEET KISNIDDNNN ILGDVIQEDF RQGSNYLSSL 180 WVHEDEFELS TLTNMMDFID EHCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 18 | 120 | 7 | 108 | B-MYB |
1h8a_C | 6e-29 | 13 | 120 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2902s0211.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519623 | 0.0 | AY519623.1 Arabidopsis thaliana MYB transcription factor (At5g14750) mRNA, complete cds. | |||
GenBank | BT026346 | 0.0 | BT026346.1 Arabidopsis thaliana At5g14750 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084715.1 | 1e-144 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 1e-142 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A384KIP7 | 1e-139 | A0A384KIP7_ARATH; WER1 | ||||
TrEMBL | C0SVP6 | 1e-139 | C0SVP6_ARATH; Uncharacterized protein At5g14750 (Fragment) | ||||
STRING | Bostr.2902s0211.1.p | 1e-150 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-144 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2902s0211.1.p |