PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.28794s0029.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38842.6 Da PI: 5.7947 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.7 | 1e-48 | 14 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l pGfrF+Ptd el+++yL++k++g+++++ vi+ev+iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++rat+ gyWkatgk Bostr.28794s0029.1.p 14 LFPGFRFSPTDVELISYYLRRKLDGDENSV-AVIDEVEIYKFEPWDLPeESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGK 101 579************************999.89***************433334678******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++v+s +++vg+k+tLvf+ grap+ge+t+W+mhey + Bostr.28794s0029.1.p 102 ERNVKS-ANQVVGTKRTLVFHIGRAPRGERTEWIMHEYCI 140 ******.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-53 | 6 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.969 | 14 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-24 | 16 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKLDGDE NSVAVIDEVE IYKFEPWDLP 60 EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG KERNVKSANQ VVGTKRTLVF 120 HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLKKNADFR ASSSQRQMED GVVQDDGYVG 180 QSGVSEKKEK SYSVYDSELQ MSNGDIAESS NVVEDQANTD DDCYAEILKD DIINLDEEAL 240 KASQAFRPTN PTQQETIFSE ALSTRSKCGI NKESKETMNC YPLFRIKNVP GTDSSWRFPN 300 PFHIKKDDSQ RLMKNVLATS VFLAILFSFF WTVLIARNYS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-42 | 4 | 156 | 10 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.28794s0029.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT028934 | 0.0 | BT028934.1 Arabidopsis thaliana At2g27300 mRNA, complete cds. | |||
GenBank | DQ056544 | 0.0 | DQ056544.1 Arabidopsis thaliana no apical meristem family protein (At2g27300) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417881.1 | 0.0 | PREDICTED: NAC domain-containing protein 40 | ||||
Swissprot | Q9XIN7 | 0.0 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | R0HQ77 | 0.0 | R0HQ77_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.28794s0029.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10453 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 0.0 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.28794s0029.1.p |
Publications ? help Back to Top | |||
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