PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28625s0302.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YA
Protein Properties Length: 283aa    MW: 31418.3 Da    PI: 9.9252
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28625s0302.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA933.6e-29137200158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk.......ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep++VNaKQyq+Il+RRq+Rakle+++k       +  +  +pylheSRh hAl+R+RgsgGrF
  Bostr.28625s0302.1.p 137 NEPIFVNAKQYQAILRRRQHRAKLEAQNKlikvrksV-YEIMQPYLHESRHLHALKRARGSGGRF 200
                           59***************************77776644.67778*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.3E-32135203IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.243136203IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.9E-25138200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEMMSTHIPG MKQTGFQLED HDSSSTQSTG GESYSEVASL SEPNNRYGHN IVTHLSGYKE  60
NPENPIGSHS KSILLKLSQD SVVLPIEAAS WPLHGTETPH FNGFLPFPYA SQRTVQHPQI  120
GGLVPSRMPL PHNIPENEPI FVNAKQYQAI LRRRQHRAKL EAQNKLIKVR KSVYEIMQPY  180
LHESRHLHAL KRARGSGGRF LNTKKLQESK SPQCPPFSGS PHVFKKSPGK FWQQDISRGG  240
VGSNGSTASC SDITGNNNDM FQQNPQFGFS GYPSNHHVSV LM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-17137204262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28625s0302.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936131e-170AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465281.11e-170PREDICTED: nuclear transcription factor Y subunit A-6-like
RefseqXP_010465282.11e-170PREDICTED: nuclear transcription factor Y subunit A-6-like
SwissprotQ9LVJ71e-154NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLD7L2B41e-163D7L2B4_ARALL; Predicted protein
TrEMBLR0HNB91e-163R0HNB9_9BRAS; Uncharacterized protein
STRINGBostr.28625s0302.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147331620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-157nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]