PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28625s0287.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 456aa    MW: 49230.1 Da    PI: 10.2099
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28625s0287.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.41.1e-1487174186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk++k +   +  + +s++++fd+l
  Bostr.28625s0287.1.p  87 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIATG--GGRSRWVFFDKL 173
                           7*************************************8766667789999******************999987..66678******9 PP

              trihelix  86 e 86 
                           +
  Bostr.28625s0287.1.p 174 D 174
                           8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2585176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEDEEEIRSH GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPANSSQKD PDALALALLP  60
IQASGGASGG GNISSGRPTG GGGREDCWSE GATAVLIDAW GERYLELSRG NLKQKHWKEV  120
AEIVSSREDY GKIPKTDIQC KNRIDTVKKK YKQEKVRIAT GGGRSRWVFF DKLDRLIGST  180
AKIPTTTPGI SGDGGPRVGG GLHKIPMGIP MGTRSNLYHQ QAKAAATPPF NNLDRLIGAT  240
ARVSAASFGG SGGGGSGGGG SVNVPMGIPM SSRSTPFGQQ GRTLPQQGRT LPHQQQQGIM  300
VKRCTESKRW RFRKRNASDS DSESEAAMSD DSGDSLPPPP LSKRMKTEEK KKQDGDGVGN  360
KWRELTRAIM RFGEAYEQTE NAKLQQVVEM EKERMKFLKE LELQRMQFFV KTQLEISQLK  420
QQHGGRMGHT SNDHHSRKNN INAIVNNSNN DVGNN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28625s0287.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006000.0AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2.
GenBankAY0721870.0AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankAY1138530.0AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188034.10.0sequence-specific DNA binding transcription factor
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A178V8Z70.0A0A178V8Z7_ARATH; ASIL2
STRINGBostr.28625s0287.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.10.0sequence-specific DNA binding transcription factors