PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28625s0284.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 287aa    MW: 32372 Da    PI: 9.9928
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28625s0284.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.73e-1346135186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W+++ +  Li+a  e+  +l+rg+lk+++W+ev++ +    + ++  ++ +qCk++++ ++k++k +k+      ++  s++ +f++l
  Bostr.28625s0284.1.p  46 CWSEEATEILINAWGERFLKLKRGNLKQQHWKEVAEIVnrdnKTKKSAKTDIQCKNRIDTVKKKFKLEKAKIAASGDDYYSKWIFFKKL 134
                           7*************************************96666666667778*****************999988899999*******9 PP

              trihelix  86 e 86 
                           e
  Bostr.28625s0284.1.p 135 E 135
                           8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2045137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKEDDEKQSH PSTAKSLARD GLALLVSPPN QAASGRRIGG GGRDDCWSEE ATEILINAWG  60
ERFLKLKRGN LKQQHWKEVA EIVNRDNKTK KSAKTDIQCK NRIDTVKKKF KLEKAKIAAS  120
GDDYYSKWIF FKKLERLIGG ATTASKALNV SPLSCRSNLY QRQAKPSTGV QRSGDSTRWH  180
FRKRVASETE SESEPDLSSD SGDSRLPPPL LLPPPVEVDK TELGEVAMAI LGFAESYEKV  240
ETVKLKQMME LEKERMKLAK ELELQTMQFF KAQLEMLLRN SQESRR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28625s0284.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641742.11e-132trihelix transcription factor ASIL1
SwissprotQ9SYG28e-76ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLR0I7T61e-115R0I7T6_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.28625s0284.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.15e-656B-interacting protein 1-like 1