PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.28243s0044.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HD-ZIP

Protein Properties

Length: 820aa MW: 91270.5 Da PI: 5.2618

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.28243s0044.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.9	1.2e-20	111	166	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k Bostr.28243s0044.1.p 111 KKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMK 166 688999***********************************************998 PP
2	START	143	2.9e-45	319	552	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGG CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddke 70 e+a ++ qel k+ + eep+W k +n++e+++ f ++ ea++a +vv+m++ +lv +l+ Bostr.28243s0044.1.p 319 EIAVSCVQELTKMCDTEEPLWIKKKsdkiggeiLCLNEEEYIRLF----PwpvenhnnkgdFRREASKANAVVIMNSITLVDAFLNAD- 402 578899**************99966565544445566666655....0445677899999**********************. PP CT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--.....-TTS CS START 71 qWdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppe....sssv 142 +W+e++ +a+t++ issg g l lm+aelq+lsplvp R+ +f+Ry +q + g w+ivd +d ++q++p +++ Bostr.28243s0044.1.p 403 KWSEMFCsivaRAKTVQIISSGvsgasGSLLLMYAELQVLSPLVPtREAYFLRYVEQnTENGNWAIVDFPIDsfHDQMQPLntntPHEY 491 **99999******************************************99******99944467777674434455 PP EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 R pSg++i++++ng+s+v wvehv+++++++h+ + vksg+a+ga++w+ lqrqce+ Bostr.28243s0044.1.p 492 TR---KPSGCIIQDMPNGYSQVKWVEHVEVDEKHVHETFAEYVKSGMAFGANRWLDVLQRQCER 552 55...*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.6E-20	100	169	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-21	105	174	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	108	168	IPR001356	Homeobox domain
SMART	SM00389	1.4E-18	109	172	IPR001356	Homeobox domain
CDD	cd00086	4.51E-19	111	169	No hit	No description
Pfam	PF00046	3.5E-18	111	166	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	143	166	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.348	310	555	IPR002913	START domain
SuperFamily	SSF55961	1.79E-30	311	554	No hit	No description
CDD	cd08875	1.04E-106	314	551	No hit	No description
SMART	SM00234	1.3E-26	319	552	IPR002913	START domain
Pfam	PF01852	9.7E-38	320	552	IPR002913	START domain
SuperFamily	SSF55961	2.06E-15	590	799	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MLTIGEGNVM TSDNMRFASQ PPSSSSPGTI QNPNFNFIPF NSFSSIIPKE ENVMMSMMMM 60 MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNR 120 QIQEMEALFK ENPHPDDKQR KRLSAELGLK PRQVKFWFQN RRTQMKAQQD RTENVMLRAE 180 NDNLKSENCH LQAELRCLSC PSCGGPTVLG DIPFNELHIE NCRLREELDR LCCIASRYTG 240 RPMQSMPSSQ PLINASPTLP HHQPSLELDM SVYAGNFPEH SCADMMMLPP QDTACFFPDQ 300 TANNNNMLLA DEEKVIAMEI AVSCVQELTK MCDTEEPLWI KKKSDKIGGE ILCLNEEEYI 360 RLFPWPVENH NNKGDFRREA SKANAVVIMN SITLVDAFLN ADKWSEMFCS IVARAKTVQI 420 ISSGVSGASG SLLLMYAELQ VLSPLVPTRE AYFLRYVEQN TENGNWAIVD FPIDSFHDQM 480 QPLNTNTPHE YTRKPSGCII QDMPNGYSQV KWVEHVEVDE KHVHETFAEY VKSGMAFGAN 540 RWLDVLQRQC ERIASLMARN ITDLGVISSA EARRNIMRLA QRMVRTFCVN ISTAYGQSWT 600 ALSETTKDTV RITTRKMCEP GQPTGVVLCA VSTTWLPFSH HQVFDLIRDQ HHQSLLEVLF 660 NGNSPHEVAH IANGSHPGNC ISLLRINVAS NSWHNVELML QESCIDNSGS LIVYSTVDVD 720 SIQLAMNGED SSNIPILPLG FSIVPVNPPE GISVNSHSPP SCLLTVAIQV LASNVPTAKP 780 NLSTVTTINN HLCATVNQIT SALSSTVTPV IASSKQEVS*

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MLTIGEGNVM TSDNMRFASQ PPSSSSPGTI QNPNFNFIPF NSFSSIIPKE ENVMMSMMMM  60
MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNR  120
QIQEMEALFK ENPHPDDKQR KRLSAELGLK PRQVKFWFQN RRTQMKAQQD RTENVMLRAE  180
NDNLKSENCH LQAELRCLSC PSCGGPTVLG DIPFNELHIE NCRLREELDR LCCIASRYTG  240
RPMQSMPSSQ PLINASPTLP HHQPSLELDM SVYAGNFPEH SCADMMMLPP QDTACFFPDQ  300
TANNNNMLLA DEEKVIAMEI AVSCVQELTK MCDTEEPLWI KKKSDKIGGE ILCLNEEEYI  360
RLFPWPVENH NNKGDFRREA SKANAVVIMN SITLVDAFLN ADKWSEMFCS IVARAKTVQI  420
ISSGVSGASG SLLLMYAELQ VLSPLVPTRE AYFLRYVEQN TENGNWAIVD FPIDSFHDQM  480
QPLNTNTPHE YTRKPSGCII QDMPNGYSQV KWVEHVEVDE KHVHETFAEY VKSGMAFGAN  540
RWLDVLQRQC ERIASLMARN ITDLGVISSA EARRNIMRLA QRMVRTFCVN ISTAYGQSWT  600
ALSETTKDTV RITTRKMCEP GQPTGVVLCA VSTTWLPFSH HQVFDLIRDQ HHQSLLEVLF  660
NGNSPHEVAH IANGSHPGNC ISLLRINVAS NSWHNVELML QESCIDNSGS LIVYSTVDVD  720
SIQLAMNGED SSNIPILPLG FSIVPVNPPE GISVNSHSPP SCLLTVAIQV LASNVPTAKP  780
NLSTVTTINN HLCATVNQIT SALSSTVTPV IASSKQEVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	DKQRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.28243s0044.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013394	0.0	AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871346.1	0.0	homeobox-leucine zipper protein HDG5
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	R0GUB6	0.0	R0GUB6_9BRAS; Uncharacterized protein
STRING	Bostr.28243s0044.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	Bostr.28243s0044.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]