PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.27895s0113.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 27036.4 Da PI: 6.5316 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.8 | 6.1e-11 | 19 | 94 | 1 | 78 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegD 78 ffk+l + + +++ + +p +f++++++k e +++l+ ++g sW +++ +++ y+ ++GW +F ++n L ++ Bostr.27895s0113.2.p 19 FFKILRKDNLSSEIMRAIPLNFIKSISNK-EFLAKMVLKVSWGSSWPITI--SRNITFyYMEKRGWDKFLSDNALGQNK 94 89999666666666669******999755.6888****************..888888566779***********9875 PP | |||||||
2 | B3 | 45.8 | 1.1e-14 | 127 | 204 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l +pk f e h+ k e+++ +++d++g +sWev ++++++++r + +GW + +k+ gL +gD+++Fkl++ +e+++kv + Bostr.27895s0113.2.p 127 LGIPKIFEEMHMPK--ETTMFKIRDPKGnKSWEVMYKVTGTQSR--FVAGWIRLAKELGLVVGDVCTFKLIK--PTEMLLKVSK 204 78*****9999744..56799****9999*******66666666..679********************987..5556777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-10 | 13 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-9 | 15 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.01E-10 | 17 | 93 | No hit | No description |
Pfam | PF02362 | 1.3E-9 | 19 | 94 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.895 | 19 | 90 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-5 | 19 | 104 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.829 | 112 | 206 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-18 | 112 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-16 | 113 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.94E-14 | 113 | 203 | No hit | No description |
SMART | SM01019 | 1.3E-14 | 115 | 206 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-11 | 127 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVKNRGFGQL MDEGDSPGFF KILRKDNLSS EIMRAIPLNF IKSISNKEFL AKMVLKVSWG 60 SSWPITISRN ITFYYMEKRG WDKFLSDNAL GQNKTKVEAV CNVSEDDTSC LVPQFTLTIK 120 KAYLIFLGIP KIFEEMHMPK ETTMFKIRDP KGNKSWEVMY KVTGTQSRFV AGWIRLAKEL 180 GLVVGDVCTF KLIKPTEMLL KVSKKGLHDY AAEVISDDDD VCEVSSDDDD DVCEVISV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.27895s0113.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004482 | 2e-80 | AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence. | |||
GenBank | CP002685 | 2e-80 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020877797.1 | 1e-53 | B3 domain-containing protein At5g18090 | ||||
Swissprot | Q9FK61 | 8e-50 | Y5809_ARATH; B3 domain-containing protein At5g18090 | ||||
TrEMBL | D7LXR4 | 2e-52 | D7LXR4_ARALL; Transcriptional factor B3 family protein | ||||
STRING | Bostr.27895s0113.1.p | 1e-154 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 4e-52 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.27895s0113.2.p |
Publications ? help Back to Top | |||
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