PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0113.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 280aa    MW: 31740.8 Da    PI: 7.273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0113.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-1519112198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffk+l + + +++ +  +p +f++++++k e   +++l+ ++g sW +++  +++    y+ ++GW +F ++n L   +f++F+++g++
  Bostr.27895s0113.1.p  19 FFKILRKDNLSSEIMRAIPLNFIKSISNK-EFLAKMVLKVSWGSSWPITI--SRNITFyYMEKRGWDKFLSDNALGNDEFLIFTHKGNM 104
                           89999666666666669******999755.6888****************..888888566779************************* PP

                           EE..EEEEE- CS
                    B3  89 efelvvkvfr 98 
                           +f   v ++r
  Bostr.27895s0113.1.p 105 CF--SVDIYR 112
                           *9..777765 PP
2B345.41.5e-141682451698
                           EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           l +pk f e h+ k  e+++ +++d++g +sWev ++++++++r  + +GW + +k+ gL +gD+++Fkl++   +e+++kv +
  Bostr.27895s0113.1.p 168 LGIPKIFEEMHMPK--ETTMFKIRDPKGnKSWEVMYKVTGTQSR--FVAGWIRLAKELGLVVGDVCTFKLIK--PTEMLLKVSK 245
                           78*****9999744..56799****9999*******66666666..679********************987..5556777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-1713112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1615117IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-1517112No hitNo description
PfamPF023621.4E-1319112IPR003340B3 DNA binding domain
SMARTSM010194.8E-1719114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.13919114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829153247IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-18153245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.53E-14154244No hitNo description
Gene3DG3DSA:2.40.330.102.3E-16154245IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-14156247IPR003340B3 DNA binding domain
PfamPF023622.3E-11168242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVKNRGFGQL MDEGDSPGFF KILRKDNLSS EIMRAIPLNF IKSISNKEFL AKMVLKVSWG  60
SSWPITISRN ITFYYMEKRG WDKFLSDNAL GNDEFLIFTH KGNMCFSVDI YRIDSKELIR  120
PRRSATIASS SCQNKTKVEA VCNVSEDDTS CLVPQFTLTI KKAYLIFLGI PKIFEEMHMP  180
KETTMFKIRD PKGNKSWEVM YKVTGTQSRF VAGWIRLAKE LGLVVGDVCT FKLIKPTEML  240
LKVSKKGLHD YAAEVISDDD DVCEVSSDDD DDVCEVISV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0113.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044823e-80AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence.
GenBankCP0026853e-80CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877797.11e-129B3 domain-containing protein At5g18090
SwissprotQ9FK613e-69Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLD7LXR41e-128D7LXR4_ARALL; Transcriptional factor B3 family protein
STRINGBostr.27895s0113.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.12e-71B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]