PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27895s0020.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HSF

Protein Properties

Length: 130aa MW: 15013.5 Da PI: 10.2819

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27895s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	45.1	2.6e-14	12	100	1	95
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 +F ++y +++d +++++isw +++++fv++++ee+ ++ + F+ + ++ F+ +L+ gFk++k +++ + eF ++ F kg Bostr.27895s0020.1.p 12 KFYDHVYALVDDLATESIISWGKSNKTFVIWNQEELIRRNMLLRFRCRTITEFISKLKHNGFKEIKGSSGG------QFEFGNRRFVKG 94 58899************************************************************9998......79******** PP XXXXXX CS HSF_DNA-bind 90 kkelle 95 + ell Bostr.27895s0020.1.p 95 QPELLW 100 *99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.7E-13	9	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.9E-17	9	99	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.13E-16	10	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.2E-13	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MACPGFPKKF LKFYDHVYAL VDDLATESII SWGKSNKTFV IWNQEELIRR NMLLRFRCRT 60 ITEFISKLKH NGFKEIKGSS GGQFEFGNRR FVKGQPELLW MMHAFALDAR IRAIEAKAKV 120 NDGLQNLEI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27895s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010415704.1	2e-42	PREDICTED: heat stress transcription factor A-4c-like
TrEMBL	A0A1J3D1L4	3e-40	A0A1J3D1L4_NOCCA; Heat stress transcription factor A-1e
TrEMBL	A0A1J3EPV2	3e-40	A0A1J3EPV2_NOCCA; Heat stress transcription factor A-1e (Fragment)
TrEMBL	A0A1J3GY99	3e-40	A0A1J3GY99_NOCCA; Heat stress transcription factor A-1a (Fragment)
TrEMBL	A0A1J3IHP8	2e-40	A0A1J3IHP8_NOCCA; Heat stress transcription factor A-1e
STRING	Bostr.27895s0020.1.p	4e-92	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19630.1	1e-27	HSF family protein

Link Out ? help Back to Top
Phytozome	Bostr.27895s0020.1.p