PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0012.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 322aa    MW: 36240.1 Da    PI: 9.6511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.18e-19351181499
                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           g  +lp +f ++ g++  +  ++++ de+ rsW++ l+++k+s+++++++GW++F+++ g k+g ++vFkl+g +++++v+ ++++
  Bostr.27895s0012.1.p  35 GSPYLPQDFSSSDGLNR-KCLEIVVIDERERSWTLDLRFNKSSDTFYISRGWRSFCDEMGKKAGGVFVFKLVG-NGETPVFCFCST 118
                           55689*****9999996.557***************************************************9.677799999986 PP
2B340.64.6e-131652362598
                           TT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  25 eh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           +   g++k++   + l  ++g +We +l+ r   gr+ l+kGWk+F+kan L+ g++++++ +  +++++++++f 
  Bostr.27895s0012.1.p 165 KQqnGLVKPG--IINLLGKDGTKWEANLR-REATGRMSLGKGWKDFAKANSLNGGESFTLEAVL-ENGTPTLSLFG 236
                           3344777555..8***************4.6666779************************544.88889998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.5E-2126119IPR003340B3 DNA binding domain
CDDcd100179.33E-1633117No hitNo description
PfamPF023624.3E-1634118IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-1835118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1436118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01439118IPR003340B3 DNA binding domain
CDDcd100171.16E-11157235No hitNo description
SMARTSM010191.5E-11158238IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-12167233IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-11168235IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-11171228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111176238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRSHVDNLFD SRHACGLMNR LGEPNNSEPR DRRLGSPYLP QDFSSSDGLN RKCLEIVVID  60
ERERSWTLDL RFNKSSDTFY ISRGWRSFCD EMGKKAGGVF VFKLVGNGET PVFCFCSTES  120
INDGTQGDKN KKENCMELVK KKKCMRCRDS TSPSLNRFVK ALVKKQQNGL VKPGIINLLG  180
KDGTKWEANL RREATGRMSL GKGWKDFAKA NSLNGGESFT LEAVLENGTP TLSLFGTQST  240
SDRSQQGEYS SRGNKNSKAT SNREERRDSS SAIQNRYVTL TLTPEDVRDC KLLLMALRQE  300
SHSLWNVLMN KTQLMCLSSV LT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-103AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-103CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180044.21e-122transcriptional factor B3 family protein
SwissprotP0CAP41e-123REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A1P8AXF81e-109A0A1P8AXF8_ARATH; Transcriptional factor B3 family protein
TrEMBLA0A1P8AXH61e-108A0A1P8AXH6_ARATH; Transcriptional factor B3 family protein
STRINGBostr.27895s0012.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-126B3 family protein