PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0007.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 307aa    MW: 34483.6 Da    PI: 9.2066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-17105197197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++d+l+++rl lp +f++ +g++k++  ++ l  ++gr+  v l  + ++gr+ l+kGWk+Fv +ngL+  ++++++l++ ++
  Bostr.27895s0007.1.p 105 FVTLTLTHDSLNNNRLGLPLPFMRGNGLNKPG--EIGLLAKEGRKLMVSL-LQDSRGRMSLGKGWKDFVLENGLQIDESFTLELIW-KD 189
                           7788899**********************776..8***************.68888889**************************9.66 PP

                           E..EEEEE CS
                    B3  90 felvvkvf 97 
                            ++++++ 
  Bostr.27895s0007.1.p 190 STPMLRLS 197
                           66777665 PP
2B335.41.9e-112233031699
                           EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                    B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            +lp +f++++g++k +  ++++  + + +W  +   + ++g +  + GW +F+kang+k+g  ++++++ +  ++++v++++ k
  Bostr.27895s0007.1.p 223 YILPSEFMRAYGIDKLG--KISILGRANMKWWGYR--SSRDGIIAVGIGWGKFCKANGVKTGNLFTLEFIYEeVDTTPVFRICPK 303
                           689********999766..7999999998885444..4444559999*********************9966699*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.993154IPR003340B3 DNA binding domain
SMARTSM010191.3E-5598IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-63899IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-54198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1799203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-19102203IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-14104196No hitNo description
SMARTSM010198.8E-24105200IPR003340B3 DNA binding domain
PfamPF023628.6E-17105197IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647105200IPR003340B3 DNA binding domain
PROSITE profilePS508639.277208304IPR003340B3 DNA binding domain
SMARTSM010192.0E-11212304IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-11222301IPR015300DNA-binding pseudobarrel domain
CDDcd100178.16E-8224302No hitNo description
PfamPF023628.2E-10224303IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-9224303IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDLRFNKSFD TCYISRGWRY FCDKNGKNSG RLFYDGNFIG KDGIRWVANL LRESAGRMSL  60
GKGLKDFSRA NGLNIDESFT LESILENATP VLSLFPKESR IQNRFVTLTL THDSLNNNRL  120
GLPLPFMRGN GLNKPGEIGL LAKEGRKLMV SLLQDSRGRM SLGKGWKDFV LENGLQIDES  180
FTLELIWKDS TPMLRLSSSG TDSECDKRHG KFCSLACEEE SVYILPSEFM RAYGIDKLGK  240
ISILGRANMK WWGYRSSRDG IIAVGIGWGK FCKANGVKTG NLFTLEFIYE EVDTTPVFRI  300
CPKSGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429454.11e-79PREDICTED: B3 domain-containing protein REM12-like isoform X2
TrEMBLD7LIB62e-97D7LIB6_ARALL; Uncharacterized protein
STRINGBostr.27895s0007.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.14e-67B3 family protein