PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0284.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 511aa    MW: 56617 Da    PI: 5.461
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0284.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.57.1e-1361535051374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv++Ll+cAeav++++l+la+al++++  las+++ +m+++a+yf+e+La+r++r        + p++++    s++l++   f+e +P
  Bostr.26959s0284.1.p 153 LVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR--------IYPRDDD-VALSDTLQI--HFYESCP 230
                           689****************************************************........4466554.334444444..5****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lkf+h+t+NqaIlea++++++vH+iD+++++GlQWpaL+qaLa Rp+gpp +R+Tg+gs    s +e++e+g++L ++A+++g++fef
  Bostr.26959s0284.1.p 231 YLKFAHFTTNQAILEAFATADKVHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIGS----SLTEIQEVGWKLGQLASTIGLNFEF 315
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           + ++ ++l+dl++e+L+++p  E++aVn+v++lhrll++++s+++    +L+++ks++P++++vveqea+hn++ Fl+rf+e+l+yys+
  Bostr.26959s0284.1.p 316 KSIALSNLSDLKPEMLDIRPgSESVAVNSVFKLHRLLAHPGSIDK----FLSMIKSIRPNIITVVEQEANHNGAFFLDRFTESLHYYSS 400
                           ********************99***************99999999....**************************************** PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                           lfdsle       ++++++++ +lgr+i n+vaceg++r+erhetl++Wr+r++  GFkpv+++++a+kqa++ll+ ++  dgy+vee+
  Bostr.26959s0284.1.p 401 LFDSLEGP----PSQDRVMSELFLGRQILNLVACEGEDRVERHETLNQWRNRFSLEGFKPVNIGSNAYKQASMLLALYAgADGYNVEEN 485
                           *****999....45556666677****************************************************************** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +g+l+lgW++rpL+++SaWr
  Bostr.26959s0284.1.p 486 EGCLLLGWQTRPLIATSAWR 505
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.2E-3932101No hitNo description
PfamPF120417.3E-323294IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.145127484IPR005202Transcription factor GRAS
PfamPF035142.4E-133153505IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MKREHNHRES SAGEGGSSSM TTAIKEDAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV  60
LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPNRIQEKP DSDYDLRAIP GSAVYPRDDH  120
VSRRSKRTRI ESELNNTTRS VVVLDSQETG VRLVHALLAC AEAVQQNNLK LADALVKHVG  180
LLASSQAGAM RKVATYFAEG LARRIYRIYP RDDDVALSDT LQIHFYESCP YLKFAHFTTN  240
QAILEAFATA DKVHVIDLGL NHGLQWPALI QALALRPNGP PDFRLTGIGS SLTEIQEVGW  300
KLGQLASTIG LNFEFKSIAL SNLSDLKPEM LDIRPGSESV AVNSVFKLHR LLAHPGSIDK  360
FLSMIKSIRP NIITVVEQEA NHNGAFFLDR FTESLHYYSS LFDSLEGPPS QDRVMSELFL  420
GRQILNLVAC EGEDRVERHE TLNQWRNRFS LEGFKPVNIG SNAYKQASML LALYAGADGY  480
NVEENEGCLL LGWQTRPLIA TSAWRINPVE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-7014850414378Protein SCARECROW
5b3h_A2e-7014850413377Protein SCARECROW
5b3h_D2e-7014850413377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0284.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1777530.0GQ177753.1 Arabidopsis thaliana ecotype Nok-3 RGL1 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176809.10.0RGA-like 1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLA0A178W7M80.0A0A178W7M8_ARATH; RGL1
STRINGBostr.26959s0284.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]